Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CS549_RS06000 Genome accession   NZ_CP024596
Coordinates   1352490..1353230 (+) Length   246 a.a.
NCBI ID   WP_005875257.1    Uniprot ID   A0A0E2LU95
Organism   Porphyromonas gingivalis strain KCOM 3131     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1347490..1358230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS549_RS05980 (CS549_05935) aspS 1347933..1349696 (-) 1764 WP_077112157.1 aspartate--tRNA ligase -
  CS549_RS11715 - 1349882..1350151 (-) 270 WP_157761314.1 DUF1661 domain-containing protein -
  CS549_RS05985 (CS549_05940) ribD 1350126..1351118 (-) 993 WP_077112160.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  CS549_RS05990 (CS549_05945) prmC 1351143..1352024 (+) 882 WP_099838231.1 peptide chain release factor N(5)-glutamine methyltransferase -
  CS549_RS05995 (CS549_05950) - 1352021..1352506 (+) 486 WP_088492464.1 regulatory protein RecX -
  CS549_RS06000 (CS549_05955) comF 1352490..1353230 (+) 741 WP_005875257.1 ComF family protein Machinery gene
  CS549_RS06005 (CS549_05960) - 1353360..1355429 (-) 2070 WP_043890003.1 M13 family metallopeptidase -
  CS549_RS06010 (CS549_05965) - 1355448..1356350 (-) 903 WP_005875328.1 hypothetical protein -
  CS549_RS10945 - 1356532..1356672 (-) 141 WP_021663364.1 hypothetical protein -
  CS549_RS06015 (CS549_05970) - 1356770..1357351 (-) 582 WP_004583806.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27475.95 Da        Isoelectric Point: 10.0451

>NTDB_id=254153 CS549_RS06000 WP_005875257.1 1352490..1353230(+) (comF) [Porphyromonas gingivalis strain KCOM 3131]
MRKTANGTGRHIRLLIRKVLDLFFPRYCPVCDSLLAETEIGVCPRCMVRMPRYIEGMQYGLDRLNGDVYIDALYSLFIFK
EDGGVRPMIHALKYGGYSEIGEMLGRMAGRSYPFLSKDYDLIVPVPLHPRKQRKRGYNQALLIAQGLSRVTGIPVQEGLR
RKVYTDSQTGQSYSERKSAMKGKFALSPNTRVAGIRVLLVDDVLTTGATVQAAAEPLAEAFAAKIGVLVAAVTKRPSNWS
HYSDER

Nucleotide


Download         Length: 741 bp        

>NTDB_id=254153 CS549_RS06000 WP_005875257.1 1352490..1353230(+) (comF) [Porphyromonas gingivalis strain KCOM 3131]
ATGAGGAAGACAGCTAACGGTACGGGCCGGCATATCCGATTACTGATTCGTAAGGTGTTGGATCTGTTTTTCCCTCGCTA
TTGTCCTGTATGCGACAGCTTGCTCGCCGAGACGGAGATCGGGGTCTGTCCTCGTTGCATGGTGAGAATGCCGCGGTATA
TCGAAGGGATGCAATATGGATTAGATCGTCTGAATGGGGATGTTTATATCGACGCGCTGTACAGCCTTTTTATTTTCAAA
GAGGACGGGGGTGTAAGGCCTATGATACACGCACTAAAATATGGAGGATACAGTGAGATCGGCGAAATGCTCGGACGAAT
GGCCGGCCGATCCTATCCTTTCCTGTCCAAGGATTACGATCTGATAGTGCCGGTTCCTTTACACCCACGCAAACAACGTA
AGCGTGGCTACAATCAGGCACTCCTCATCGCACAGGGATTAAGTCGTGTAACGGGAATACCTGTTCAAGAAGGTTTGCGC
AGAAAGGTATATACGGACAGTCAGACCGGACAGTCCTATTCGGAACGAAAGTCAGCCATGAAAGGGAAGTTTGCCCTCTC
CCCGAATACGCGCGTGGCCGGTATCCGTGTTCTTTTGGTGGACGATGTGCTGACTACCGGAGCTACGGTACAGGCTGCGG
CCGAGCCATTGGCAGAAGCCTTTGCGGCCAAGATCGGTGTACTGGTGGCAGCCGTCACCAAACGTCCCTCGAATTGGTCT
CATTATTCTGATGAGCGATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2LU95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Porphyromonas gingivalis W83

100

100

1

Multiple sequence alignment