Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CS548_RS01900 Genome accession   NZ_CP024594
Coordinates   425579..426319 (+) Length   246 a.a.
NCBI ID   WP_021677110.1    Uniprot ID   A0AAE9X738
Organism   Porphyromonas gingivalis strain KCOM 2805     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 420579..431319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS548_RS01880 (CS548_01860) aspS 421021..422784 (-) 1764 WP_099810855.1 aspartate--tRNA ligase -
  CS548_RS12220 - 422970..423218 (-) 249 WP_157761734.1 DUF1661 domain-containing protein -
  CS548_RS01885 (CS548_01865) ribD 423215..424207 (-) 993 WP_099810858.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  CS548_RS01890 (CS548_01870) prmC 424232..425113 (+) 882 WP_021663368.1 peptide chain release factor N(5)-glutamine methyltransferase -
  CS548_RS01895 (CS548_01875) - 425110..425595 (+) 486 WP_021662028.1 regulatory protein RecX -
  CS548_RS01900 (CS548_01880) comF 425579..426319 (+) 741 WP_021677110.1 ComF family protein Machinery gene
  CS548_RS01905 (CS548_01885) - 426449..428518 (-) 2070 WP_099810860.1 M13 family metallopeptidase -
  CS548_RS01910 (CS548_01890) - 428537..429439 (-) 903 WP_099810863.1 nucleotidyltransferase -
  CS548_RS11350 - 429621..429761 (-) 141 WP_021663364.1 hypothetical protein -
  CS548_RS01915 (CS548_01895) - 429859..430440 (-) 582 WP_004583806.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27447.90 Da        Isoelectric Point: 10.0451

>NTDB_id=254137 CS548_RS01900 WP_021677110.1 425579..426319(+) (comF) [Porphyromonas gingivalis strain KCOM 2805]
MRKTANGTGRHIRLLIRKALDLFFPRYCPVCDSLLAETEIGVCPRCMVRMPRYIEGMQYGLDRLNGDVYIDALYSLFIFK
EDGGVRPMIHALKYGGYSEIGEMLGRMAGRSYPFLSKDYDLIVPVPLHPRKQRKRGYNQALLIAQGLSRVTGIPVQEGLR
RKVYTDSQTGQSYSERKSAMKGKFALSPNTRVAGIRVLLVDDVLTTGATVQAAAEPLAEAFAAKIGVLVAAVTKRPSNWS
HYSDER

Nucleotide


Download         Length: 741 bp        

>NTDB_id=254137 CS548_RS01900 WP_021677110.1 425579..426319(+) (comF) [Porphyromonas gingivalis strain KCOM 2805]
ATGAGGAAGACAGCTAACGGTACGGGCCGGCATATCCGATTGCTGATTCGTAAGGCGTTGGATCTGTTTTTCCCTCGCTA
TTGTCCTGTATGCGACAGCTTGCTCGCCGAGACGGAGATCGGGGTCTGTCCTCGTTGCATGGTGAGAATGCCGCGGTATA
TCGAAGGGATGCAATATGGATTAGATCGTCTGAATGGGGATGTTTATATCGACGCGCTGTACAGCCTTTTTATTTTCAAA
GAGGACGGGGGTGTAAGGCCTATGATACACGCACTAAAATATGGAGGATACAGTGAGATCGGCGAAATGCTCGGACGAAT
GGCCGGCCGATCCTATCCTTTCCTGTCCAAGGATTACGATCTGATAGTGCCGGTTCCTTTACACCCACGCAAACAACGTA
AGCGTGGCTACAATCAGGCACTCCTCATCGCACAAGGATTAAGTCGCGTAACGGGAATACCTGTTCAAGAAGGTTTGCGC
AGAAAGGTATATACGGACAGTCAGACCGGACAGTCCTATTCGGAACGAAAGTCAGCCATGAAAGGGAAGTTTGCCCTCTC
CCCGAATACGCGCGTGGCCGGTATCCGTGTTCTTTTGGTGGACGATGTGCTGACTACCGGGGCTACGGTACAGGCTGCGG
CCGAGCCATTGGCAGAAGCCTTTGCGGCCAAGATCGGTGTATTGGTGGCAGCCGTTACCAAGCGTCCCTCGAATTGGTCT
CATTATTCTGATGAGCGATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Porphyromonas gingivalis W83

99.593

100

0.996

Multiple sequence alignment