Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CS545_RS09360 Genome accession   NZ_CP024592
Coordinates   2054220..2054960 (-) Length   246 a.a.
NCBI ID   WP_005875257.1    Uniprot ID   A0A0E2LU95
Organism   Porphyromonas gingivalis strain KCOM 2803     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2049220..2059960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS545_RS09345 (CS545_09275) - 2050099..2050680 (+) 582 WP_099840815.1 RNA polymerase sigma factor -
  CS545_RS11575 - 2050778..2050918 (+) 141 WP_021663364.1 hypothetical protein -
  CS545_RS09350 (CS545_09280) - 2051100..2052002 (+) 903 WP_039417049.1 nucleotidyltransferase -
  CS545_RS09355 (CS545_09285) - 2052021..2054090 (+) 2070 WP_043898309.1 M13 family metallopeptidase -
  CS545_RS09360 (CS545_09290) comF 2054220..2054960 (-) 741 WP_005875257.1 ComF family protein Machinery gene
  CS545_RS09365 (CS545_09295) - 2054944..2055429 (-) 486 WP_097652255.1 regulatory protein RecX -
  CS545_RS09370 (CS545_09300) prmC 2055426..2056307 (-) 882 WP_099840816.1 peptide chain release factor N(5)-glutamine methyltransferase -
  CS545_RS09375 (CS545_09305) ribD 2056332..2057324 (+) 993 WP_021680230.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  CS545_RS11930 - 2057408..2057569 (+) 162 WP_369522884.1 DUF1661 domain-containing protein -
  CS545_RS09380 (CS545_09310) aspS 2057755..2059518 (+) 1764 WP_099840817.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27475.95 Da        Isoelectric Point: 10.0451

>NTDB_id=254130 CS545_RS09360 WP_005875257.1 2054220..2054960(-) (comF) [Porphyromonas gingivalis strain KCOM 2803]
MRKTANGTGRHIRLLIRKVLDLFFPRYCPVCDSLLAETEIGVCPRCMVRMPRYIEGMQYGLDRLNGDVYIDALYSLFIFK
EDGGVRPMIHALKYGGYSEIGEMLGRMAGRSYPFLSKDYDLIVPVPLHPRKQRKRGYNQALLIAQGLSRVTGIPVQEGLR
RKVYTDSQTGQSYSERKSAMKGKFALSPNTRVAGIRVLLVDDVLTTGATVQAAAEPLAEAFAAKIGVLVAAVTKRPSNWS
HYSDER

Nucleotide


Download         Length: 741 bp        

>NTDB_id=254130 CS545_RS09360 WP_005875257.1 2054220..2054960(-) (comF) [Porphyromonas gingivalis strain KCOM 2803]
ATGAGGAAGACAGCTAACGGTACGGGCCGGCATATCCGATTGCTGATTCGTAAGGTGTTGGATCTGTTTTTCCCTCGCTA
TTGTCCTGTATGCGACAGCTTGCTCGCCGAGACGGAGATCGGGGTCTGTCCTCGTTGCATGGTGAGAATGCCGCGGTATA
TCGAAGGGATGCAATATGGATTAGATCGTCTGAATGGGGATGTTTATATCGACGCGCTGTACAGCCTTTTTATTTTCAAA
GAGGACGGGGGTGTAAGGCCTATGATACACGCACTAAAATATGGAGGATACAGTGAGATCGGCGAAATGCTCGGACGAAT
GGCCGGCCGATCCTATCCTTTCCTGTCCAAGGATTACGATCTGATAGTGCCGGTTCCTTTACACCCACGCAAACAACGTA
AGCGTGGCTACAATCAGGCACTCCTCATCGCACAAGGATTAAGTCGCGTAACGGGAATACCTGTTCAAGAAGGTTTGCGC
AGAAAGGTATATACGGACAGTCAGACCGGACAGTCCTATTCGGAACGAAAGTCAGCCATGAAAGGGAAGTTTGCCCTCTC
CCCGAATACGCGCGTGGCCGGTATCCGTGTTCTTTTGGTGGACGATGTGCTGACTACCGGAGCTACGGTACAGGCTGCGG
CCGAGCCATTGGCAGAAGCCTTTGCGGCCAAGATCGGTGTACTGGTGGCAGCCGTCACCAAACGTCCCTCGAATTGGTCT
CATTATTCTGATGAGCGATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2LU95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Porphyromonas gingivalis W83

100

100

1

Multiple sequence alignment