Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CS544_RS04700 Genome accession   NZ_CP024591
Coordinates   1056555..1057295 (-) Length   246 a.a.
NCBI ID   WP_099777572.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain KCOM 2802     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1051555..1062295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS544_RS04685 (CS544_04645) - 1052434..1053015 (+) 582 WP_004583806.1 RNA polymerase sigma factor -
  CS544_RS10875 - 1053113..1053253 (+) 141 WP_021663364.1 hypothetical protein -
  CS544_RS04690 (CS544_04650) - 1053435..1054337 (+) 903 WP_077491643.1 nucleotidyltransferase -
  CS544_RS04695 (CS544_04655) - 1054356..1056425 (+) 2070 WP_099777571.1 M13 family metallopeptidase -
  CS544_RS04700 (CS544_04660) comF 1056555..1057295 (-) 741 WP_099777572.1 ComF family protein Machinery gene
  CS544_RS04705 (CS544_04665) - 1057279..1057767 (-) 489 WP_099777573.1 regulatory protein RecX -
  CS544_RS04710 (CS544_04670) prmC 1057764..1058645 (-) 882 WP_099777574.1 peptide chain release factor N(5)-glutamine methyltransferase -
  CS544_RS04715 (CS544_04675) ribD 1058670..1059662 (+) 993 WP_099777575.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  CS544_RS11865 - 1059746..1059907 (+) 162 WP_394365339.1 DUF1661 domain-containing protein -
  CS544_RS04720 (CS544_04680) aspS 1060093..1061856 (+) 1764 WP_005875297.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27485.99 Da        Isoelectric Point: 10.0451

>NTDB_id=254120 CS544_RS04700 WP_099777572.1 1056555..1057295(-) (comF) [Porphyromonas gingivalis strain KCOM 2802]
MRKTANGTGRHIRLLIRKVLDLFFPRYCPVCDSLLAETEIGVCPRCMVRMPRYIEGMQYGLDRLNGDVYIDALYSLFIFK
EDGGVRPMIHALKYGGYSEIGEMLGRMAGRSYPFLPKDYDLIVPVPLHPRKQRKRGYNQALLIAQGLSRVTGIPVQEGLR
RKVYTDSQTGQSYSERKSAMKGKFALSPNTRVAGIRVLLVDDVLTTGATVQAAAEPLAEAFAAKIGVLVAAVTKRPSNWS
HYSDER

Nucleotide


Download         Length: 741 bp        

>NTDB_id=254120 CS544_RS04700 WP_099777572.1 1056555..1057295(-) (comF) [Porphyromonas gingivalis strain KCOM 2802]
ATGAGGAAGACTGCTAACGGTACGGGCCGGCATATCCGATTGCTGATTCGTAAGGTGTTGGATCTGTTTTTCCCTCGCTA
TTGTCCTGTATGCGACAGCTTGCTCGCCGAGACGGAGATCGGGGTCTGTCCTCGTTGCATGGTGAGAATGCCGCGGTATA
TCGAAGGGATGCAATATGGATTAGATCGTCTGAATGGGGATGTTTATATCGACGCGCTGTACAGCCTTTTTATTTTCAAA
GAGGACGGGGGTGTAAGGCCTATGATACACGCACTAAAATATGGAGGATACAGTGAGATCGGCGAAATGCTCGGACGAAT
GGCCGGCCGATCCTATCCTTTCCTGCCCAAGGATTACGATCTGATAGTGCCGGTTCCTTTACACCCACGCAAACAACGTA
AGCGTGGCTACAATCAGGCACTCCTCATCGCACAGGGATTAAGTCGCGTAACGGGAATACCTGTTCAAGAAGGTTTGCGC
AGAAAGGTATATACGGACAGTCAGACCGGACAGTCCTATTCGGAACGAAAGTCAGCCATGAAAGGGAAGTTTGCCCTCTC
CCCGAATACGCGCGTGGCCGGTATCCGTGTTCTTTTGGTGGACGATGTGCTGACTACCGGAGCTACGGTACAGGCTGCGG
CCGAGCCATTGGCAGAAGCCTTTGCAGCCAAGATCGGTGTACTGGTGGCAGCCGTCACCAAACGTCCCTCGAATTGGTCT
CATTATTCTGATGAGCGATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Porphyromonas gingivalis W83

99.593

100

0.996

Multiple sequence alignment