Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AUF16_RS11025 Genome accession   NZ_CP024590
Coordinates   2224854..2226698 (-) Length   614 a.a.
NCBI ID   WP_016179536.1    Uniprot ID   A0AAV3J5K5
Organism   Enterococcus avium strain FDAARGOS_184     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2219854..2231698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUF16_RS11000 (AUF16_11015) - 2220188..2221177 (+) 990 WP_049220546.1 transketolase family protein -
  AUF16_RS11005 (AUF16_11020) - 2221220..2222260 (-) 1041 WP_049220544.1 2-hydroxyacid dehydrogenase -
  AUF16_RS11010 (AUF16_11025) - 2222287..2222925 (-) 639 WP_204371494.1 L-fuculose-phosphate aldolase -
  AUF16_RS11015 (AUF16_11030) - 2223205..2224224 (+) 1020 WP_049220542.1 DUF4947 domain-containing protein -
  AUF16_RS11020 (AUF16_11035) - 2224214..2224792 (+) 579 WP_049220539.1 hypothetical protein -
  AUF16_RS11025 (AUF16_11040) rcrQ 2224854..2226698 (-) 1845 WP_016179536.1 ABC transporter ATP-binding protein Regulator
  AUF16_RS11030 (AUF16_11045) - 2226714..2229095 (-) 2382 WP_049221822.1 ABC transporter ATP-binding protein -
  AUF16_RS11035 (AUF16_11050) - 2229095..2229541 (-) 447 WP_016179534.1 MarR family winged helix-turn-helix transcriptional regulator -
  AUF16_RS11040 (AUF16_11055) - 2229747..2231570 (-) 1824 WP_049221823.1 APC family permease -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 68111.74 Da        Isoelectric Point: 6.2100

>NTDB_id=254092 AUF16_RS11025 WP_016179536.1 2224854..2226698(-) (rcrQ) [Enterococcus avium strain FDAARGOS_184]
MAEQKQNRPRGGGPGRGMSAPVEKAKDFKGTIKKLVSYLGAYKIAVFFVMIFAAASTIFNIWGPKILSKAITELFNGLIK
KYQGTGDINFDKIGGILLFMLGLYVVASLFGIIQGWIMSTISQKITYRMRKEISEKINRMPMNYFESRTTGEVLSRITND
VDTLGQSLNQSLTQLITSTFTIIGVIVMMLSISVKMTGIAILIVPISLLLIMVVVKNSQKYFKTQQEYLGVINGKVEETI
GGYTIVRLFNEEENSLKEFKEQNDILFKSAWKSQFLSGLMQPIMNFVGNLGYVGVAIAGGVMAYNGTITVGDIQAFIQYV
RNLTQPIAQLAQVSNMLQSMAAAAERVFEFLAEDEEEQMAENPVQIDKAKGMVDFDHVQFGYTSDKIVIQDFTSHVDPGQ
TVAIVGPTGAGKTTMVKLLMRFYDVNSGAIKIDGHNIKDFNRADLRKNIGMVLQDTWLFKGTIMDNLRYGRLDATDEEVY
AAAKAAHVDHFIKTLPGGYDMELNEESSNISQGQKQLLTIARAILADKPILILDEATSSVDTRTEGLIQEAMNNLMKGRT
SFVIAHRLSTIKDADKILYMQGGDIKEQGSHEELLAQNGLYAALYNSQFEELSE

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=254092 AUF16_RS11025 WP_016179536.1 2224854..2226698(-) (rcrQ) [Enterococcus avium strain FDAARGOS_184]
ATGGCAGAACAAAAACAAAATCGCCCTCGTGGTGGCGGACCTGGTCGAGGGATGAGTGCGCCAGTTGAAAAAGCGAAAGA
TTTCAAAGGTACGATCAAAAAATTGGTTTCGTATCTTGGCGCTTATAAAATCGCCGTTTTCTTTGTAATGATCTTTGCGG
CAGCTTCAACGATCTTCAATATTTGGGGACCAAAGATCCTGTCAAAGGCGATCACAGAATTATTTAACGGTCTGATCAAG
AAATATCAGGGAACTGGCGATATCAACTTTGATAAAATCGGTGGTATCCTGCTCTTCATGTTAGGTCTTTATGTAGTTGC
TTCCTTATTTGGGATCATCCAAGGCTGGATCATGTCGACGATTTCGCAAAAGATTACTTATCGGATGCGGAAAGAGATTT
CTGAAAAAATCAACCGCATGCCAATGAATTATTTTGAAAGTCGGACGACTGGTGAGGTTTTATCACGAATCACTAATGAC
GTGGATACTTTAGGACAATCATTGAACCAAAGTTTGACTCAATTAATTACTTCAACATTTACCATAATCGGAGTTATCGT
GATGATGCTTTCAATCTCAGTGAAGATGACCGGTATCGCGATCTTGATCGTGCCGATCTCACTTCTATTGATCATGGTTG
TCGTGAAGAATTCGCAAAAGTATTTCAAAACGCAACAAGAATATCTTGGTGTGATCAATGGTAAAGTTGAAGAAACAATC
GGTGGATACACCATCGTACGCTTATTCAACGAGGAAGAAAACTCATTGAAAGAATTCAAAGAACAAAATGATATTCTCTT
CAAATCAGCATGGAAATCTCAATTTCTTTCTGGTTTGATGCAGCCGATCATGAACTTTGTCGGTAACTTAGGATATGTAG
GTGTGGCGATTGCCGGTGGTGTGATGGCTTATAACGGTACGATCACTGTTGGGGATATTCAAGCGTTTATTCAATATGTA
CGAAATCTGACACAGCCGATCGCACAACTAGCTCAAGTATCAAACATGCTGCAATCAATGGCAGCAGCGGCAGAACGGGT
CTTTGAATTCTTAGCAGAAGATGAAGAAGAACAAATGGCTGAAAATCCTGTTCAAATTGATAAGGCAAAAGGAATGGTCG
ATTTCGATCATGTTCAATTTGGCTATACATCTGATAAAATCGTTATTCAAGATTTTACTTCGCATGTTGATCCTGGTCAG
ACAGTTGCGATTGTTGGTCCAACTGGTGCAGGTAAAACCACGATGGTTAAATTATTGATGCGTTTTTATGATGTCAACTC
TGGTGCGATTAAGATTGATGGTCACAATATCAAAGATTTCAATCGTGCTGATTTGCGTAAGAACATTGGGATGGTCTTGC
AGGATACGTGGTTGTTCAAAGGGACGATCATGGACAACTTGCGGTACGGTCGTTTAGATGCGACCGACGAAGAAGTTTAC
GCAGCAGCTAAAGCCGCTCACGTGGATCACTTCATCAAGACATTGCCTGGTGGCTATGACATGGAATTGAACGAAGAATC
TTCCAATATCTCTCAAGGGCAAAAGCAATTGCTGACGATTGCGCGTGCGATCTTAGCTGATAAGCCAATTTTGATCTTGG
ATGAGGCAACATCATCTGTTGATACACGGACAGAAGGATTGATTCAAGAAGCGATGAACAATCTGATGAAGGGGCGGACG
TCATTTGTTATCGCTCACCGTCTATCAACGATCAAGGATGCCGATAAGATTCTTTATATGCAAGGCGGAGATATCAAAGA
ACAAGGAAGCCATGAAGAACTATTGGCTCAAAACGGACTTTATGCCGCGTTGTACAACTCACAATTTGAAGAATTATCAG
AATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(46-326)

ABC transporter (ABC_tran)

(391-538)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.458

94.951

0.489

Multiple sequence alignment