Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DLJ52_RS02235 Genome accession   NZ_CP029559
Coordinates   425334..426119 (+) Length   261 a.a.
NCBI ID   WP_002961407.1    Uniprot ID   A0ABN5LIW2
Organism   Streptococcus sobrinus strain NIDR 6715-15     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 420334..431119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ52_RS02220 (DLJ52_02220) - 421290..422702 (+) 1413 WP_109982436.1 Cof-type HAD-IIB family hydrolase -
  DLJ52_RS02225 (DLJ52_02225) - 422863..423312 (-) 450 WP_002961404.1 universal stress protein -
  DLJ52_RS02230 (DLJ52_02230) - 423558..424772 (+) 1215 WP_019777882.1 pyridoxal phosphate-dependent aminotransferase -
  DLJ52_RS02235 (DLJ52_02235) codY 425334..426119 (+) 786 WP_002961407.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DLJ52_RS02240 (DLJ52_02240) - 426503..428059 (+) 1557 WP_109982437.1 type I restriction-modification system subunit M -
  DLJ52_RS02245 (DLJ52_02245) - 428049..429056 (+) 1008 WP_109982438.1 virulence RhuM family protein -
  DLJ52_RS02250 (DLJ52_02250) - 429053..430270 (+) 1218 WP_019792377.1 restriction endonuclease subunit S -
  DLJ52_RS02255 (DLJ52_02255) - 430329..430880 (+) 552 WP_019771594.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28920.08 Da        Isoelectric Point: 4.3323

>NTDB_id=254077 DLJ52_RS02235 WP_002961407.1 425334..426119(+) (codY) [Streptococcus sobrinus strain NIDR 6715-15]
MTSLLEKTRKITSILQRSVDSLQEDLPYNIMAMQLADIIDCNACIVDGGGTLLGYAMKYKTNTDRVEEIFDAQQFPDDYM
RGISRVYDTEANIPVSSELTIFPVESRDNYPKGLTTLAPIYGGGMRLGSLIIWRNDDDFTDDDLVLVEIASTVVGIQLLN
LQTENLEETIRKQTAVNMAINTLSYSEMKAVTAILNELDGIEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINDGIFDKIKDFS

Nucleotide


Download         Length: 786 bp        

>NTDB_id=254077 DLJ52_RS02235 WP_002961407.1 425334..426119(+) (codY) [Streptococcus sobrinus strain NIDR 6715-15]
ATGACTAGCTTATTAGAAAAAACAAGAAAAATCACTTCTATCTTGCAGCGATCTGTTGATAGCTTGCAGGAGGACCTGCC
ATACAATATTATGGCCATGCAGTTAGCTGATATTATTGACTGTAATGCCTGTATCGTTGATGGTGGGGGTACCCTTCTTG
GCTATGCTATGAAGTATAAGACCAATACCGACCGAGTTGAGGAAATATTTGACGCTCAGCAGTTTCCTGATGACTATATG
CGGGGAATTAGTCGAGTTTATGATACCGAAGCCAATATTCCTGTTTCTAGTGAGTTGACTATTTTTCCTGTTGAGTCCAG
AGACAATTATCCTAAGGGGCTGACGACTCTAGCGCCAATTTATGGTGGTGGAATGCGCTTGGGCTCCCTCATCATCTGGC
GTAATGATGATGATTTTACCGATGATGATTTAGTCTTGGTTGAGATTGCTTCGACTGTTGTTGGAATTCAGCTTCTTAAT
CTACAGACAGAAAATCTGGAAGAAACTATCCGCAAGCAAACTGCTGTTAATATGGCCATTAACACCTTGTCTTATTCAGA
AATGAAGGCCGTTACAGCTATTTTAAATGAGTTGGATGGGATTGAAGGCCGTTTAACAGCCTCAGTTATTGCTGATCGTA
TTGGGATCACTCGATCGGTTATTGTCAATGCCTTGCGCAAACTGGAAAGCGCAGGGATTATCGAAAGTCGCTCCTTGGGG
ATGAAGGGAACATATCTCAAGGTGATCAACGATGGGATTTTCGATAAGATAAAAGATTTTAGTTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-260)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

66.148

98.467

0.651
  codY Bacillus subtilis subsp. subtilis str. 168

50.385

99.617

0.502