Detailed information NTG0254072

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: DLJ52_RS01940
• Genome accession: NZ_CP029559
• Coordinates: 360328..362961 (-)
• Length: 877 a.a.
• NCBI ID: WP_021673921.1
• Uniprot ID: -
• Organism: Streptococcus sobrinus strain NIDR 6715-15
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 355328..367961

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DLJ52_RS01920 (DLJ52_01920)	dinB	356990..358087 (+)	1098	WP_109982417.1	DNA polymerase IV	-
DLJ52_RS01925 (DLJ52_01925)	-	358672..359157 (-)	486	WP_094966517.1	hypothetical protein	-
DLJ52_RS01930 (DLJ52_01930)	-	359213..359797 (-)	585	WP_019769455.1	hypothetical protein	-
DLJ52_RS01935 (DLJ52_01935)	-	359851..360318 (-)	468	WP_019777448.1	hypothetical protein	-
DLJ52_RS01940 (DLJ52_01940)	recD/recD2/recDB	360328..362961 (-)	2634	WP_021673921.1	ATP-dependent RecD-like DNA helicase	Machinery gene
DLJ52_RS01945 (DLJ52_01945)	lepB	363093..363737 (-)	645	WP_002959271.1	signal peptidase I	-
DLJ52_RS01950 (DLJ52_01950)	rnhC	363753..364676 (-)	924	WP_109982418.1	ribonuclease HIII	-
DLJ52_RS01955 (DLJ52_01955)	-	364843..365151 (+)	309	WP_002959273.1	hypothetical protein	-
DLJ52_RS01960 (DLJ52_01960)	-	365155..365673 (+)	519	WP_002959274.1	CvpA family protein	-

Sequence

Protein

• Length: 877 a.a.
• Molecular weight: 97401.30 Da
• Isoelectric Point: 4.3976

>NTDB_id=254072 DLJ52_RS01940 WP_021673921.1 360328..362961(-) (recD/recD2/recDB) [Streptococcus sobrinus strain NIDR 6715-15]
MTELYFSGTVDRIIFENASNFFKILLLEIEETNAPDFDDFEIIITGTMADIMEGEDYTFWGQLTQHPKYGEQLKANRYER
AQLTSAGLIKYFSSNNFKGIGKKTAQRIVETYGDDDTIDKILAQPDKLEAISGLSKVNRANFLARLRANYGTEQILSKLA
EFGLSNRQALEIYDSYKEETLDIIQENPYQLVEDIKGIGFKIADNLAQQLGIESDSPQRFRAALVHSLTETSLERGDTYV
EARDLLESAVNLLEEARQIELNPALVANELTNLIAEDKVQNIGTRIFDNTLYYAEEGIKNNLERILALPLEQDYSDKEIE
AELAEIQDELGVHYDTIQKEAIIQALTSKVFLLTGGPGTGKTTVIKGLIKTYAQLKGIDLNKGDLPIILAAPTGRASRRM
SELTGLPAATIHRHLGLTTDDSDFQTLDDYLDCDLIIIDEFSMVDAWLANQLLSAISSKTQIIIVGDSDQLPSVGPGQVL
ADLLKIPNLPQVSLTKIFRQSEDSTIVTLASQIRQGQLPVDFTTKKADRSYFEAQANHIPSMVQQIVSSAIRSGIQAQEI
QILAPMYRGQAGITNLNTLMQELLNSQKEGESQFLFNDLTFRKGDKVLHLINDAELNVFNGDIGVITDLIPGKYTESKQD
EIWLDFDGSEVIYPRNEWNKITLAYAMSIHKSQGSEFQVVILPLTRQSGRMLQRNLIYTAITRSKSKLIMLGEVSAFDYA
VKNQGTQRKTYLIQRFDQEGQEETTSQQSGPGQAATSQSLGESAEESVTRLTPANSQSEFASDSTADKTGSNNQASAAAD
LKPASKSRLDSQSEVSSSTQTSASDKNEVDKTTTIEQLPEGSPQSYRLTETNILTIDPMIGLTQTDIDSFFKQKTEN

Nucleotide

• Length: 2634 bp

>NTDB_id=254072 DLJ52_RS01940 WP_021673921.1 360328..362961(-) (recD/recD2/recDB) [Streptococcus sobrinus strain NIDR 6715-15]
ATGACAGAACTCTATTTTTCAGGAACTGTTGACCGCATTATTTTTGAAAATGCCAGCAACTTCTTTAAAATTCTCCTCTT
AGAAATTGAAGAGACCAATGCTCCTGACTTTGACGACTTTGAAATCATCATTACAGGTACCATGGCCGATATCATGGAAG
GGGAGGACTATACCTTCTGGGGCCAGTTGACCCAGCACCCCAAGTACGGGGAGCAACTCAAGGCCAATCGCTACGAGCGA
GCCCAACTGACCTCTGCCGGGCTTATCAAGTATTTCTCCAGCAATAACTTTAAGGGAATCGGTAAAAAGACCGCCCAAAG
GATTGTCGAGACCTACGGCGATGACGATACTATTGACAAAATTCTGGCTCAGCCTGATAAGTTGGAGGCTATCTCAGGAC
TTTCCAAGGTCAATCGGGCTAATTTTCTAGCTAGACTAAGGGCCAATTATGGGACCGAGCAGATTCTCTCCAAACTGGCT
GAATTCGGTCTCAGCAACCGCCAGGCCCTGGAAATCTATGACAGCTACAAGGAAGAGACCCTGGACATCATCCAGGAAAA
TCCCTACCAGCTGGTTGAAGATATCAAGGGGATTGGCTTTAAGATTGCCGATAACCTAGCCCAGCAACTAGGTATTGAGA
GTGATTCACCCCAGCGCTTCCGGGCTGCCCTAGTTCACAGTCTGACCGAAACCTCACTTGAGCGGGGTGATACCTATGTC
GAGGCCCGCGACCTCTTGGAGTCTGCCGTCAATCTCTTGGAAGAGGCCAGACAGATAGAATTGAACCCAGCCTTAGTGGC
TAATGAATTGACCAACCTCATCGCTGAAGATAAGGTGCAGAACATAGGCACCCGTATCTTTGACAATACCCTCTACTATG
CCGAAGAAGGCATTAAAAACAATCTGGAACGGATTCTGGCCCTACCTCTTGAGCAAGACTACTCAGACAAGGAAATTGAA
GCTGAGCTAGCAGAGATTCAAGATGAGTTAGGTGTTCACTATGACACCATCCAAAAGGAAGCTATTATTCAAGCGCTGAC
CAGCAAAGTCTTTCTCCTGACAGGGGGACCTGGAACTGGTAAAACGACTGTCATCAAAGGTTTGATCAAGACCTATGCCC
AGCTCAAGGGGATTGACCTTAATAAGGGCGACCTGCCTATCATCTTAGCTGCCCCTACTGGTCGGGCTAGTCGGCGGATG
AGTGAGCTGACGGGGCTACCAGCCGCTACCATCCACCGCCACCTAGGCCTGACTACTGACGACAGCGATTTTCAGACACT
GGATGACTATCTGGACTGTGATCTGATTATTATTGATGAATTTTCTATGGTCGATGCCTGGCTGGCCAATCAATTACTGA
GCGCTATTTCCAGCAAGACCCAGATCATCATCGTTGGTGATAGCGACCAGCTGCCTTCTGTCGGTCCCGGTCAGGTCTTG
GCAGACCTCCTGAAAATTCCTAACCTGCCTCAGGTCAGTCTGACAAAAATCTTCCGCCAGTCAGAAGATTCCACCATTGT
CACCCTGGCTAGTCAAATTCGTCAGGGACAACTGCCAGTAGATTTCACCACCAAGAAGGCCGACCGCTCCTATTTTGAAG
CCCAGGCCAACCACATTCCCAGCATGGTGCAACAGATTGTTAGCTCTGCCATCCGCAGTGGCATTCAGGCCCAGGAAATC
CAAATTCTGGCCCCCATGTACCGTGGCCAAGCGGGAATTACCAACCTCAACACCCTCATGCAGGAGCTCCTCAACTCCCA
GAAAGAGGGAGAGAGCCAATTTCTCTTCAATGACCTAACCTTTCGCAAGGGCGACAAGGTTCTCCACCTCATCAACGATG
CTGAACTCAATGTTTTTAATGGCGACATCGGTGTTATTACCGACCTGATTCCGGGCAAATATACCGAAAGTAAGCAGGAC
GAAATCTGGCTGGACTTTGATGGAAGCGAAGTCATCTACCCCCGCAATGAATGGAACAAAATTACTCTGGCCTATGCCAT
GTCCATTCATAAATCCCAAGGGAGCGAATTTCAGGTGGTCATTCTGCCACTGACACGTCAGAGCGGTCGTATGCTCCAAC
GCAATCTTATCTACACGGCCATCACCCGCTCCAAGAGTAAGCTGATTATGCTGGGAGAGGTTTCCGCCTTTGACTACGCC
GTTAAAAATCAAGGCACCCAACGCAAGACCTATCTCATTCAGCGCTTTGATCAAGAGGGACAAGAGGAAACTACTTCTCA
GCAATCAGGCCCAGGTCAAGCAGCCACTAGCCAATCCCTTGGCGAGTCAGCAGAAGAATCAGTAACCAGACTCACCCCAG
CAAACAGCCAGTCCGAATTTGCCAGCGACTCAACCGCTGACAAGACTGGCAGCAACAATCAAGCATCAGCTGCTGCTGAC
TTAAAACCAGCTAGTAAATCTAGACTTGACAGCCAATCTGAAGTTAGCAGTTCAACCCAAACTTCAGCATCTGACAAAAA
TGAAGTTGACAAAACCACAACCATTGAACAGCTCCCTGAGGGAAGTCCCCAAAGCTATCGTCTCACCGAAACCAACATAC
TCACCATTGACCCCATGATTGGCCTCACCCAAACTGATATCGACAGTTTCTTTAAACAAAAAACGGAAAACTAG

Domains

Predicted by InterProScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (664-710)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (576-646)

• Helix-hairpin-helix containing domain (HHH_RecD2) (149-239)

• AAA domain (AAA_30) (335-524)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	43.197	86.317	0.373