Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   DKG71_RS15405 Genome accession   NZ_CP029541
Coordinates   3690897..3693110 (-) Length   737 a.a.
NCBI ID   WP_109889861.1    Uniprot ID   -
Organism   Streptomyces sp. NEAU-S7GS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3685897..3698110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG71_RS15385 (DKG71_15385) - 3686644..3687675 (+) 1032 WP_109889855.1 Gfo/Idh/MocA family oxidoreductase -
  DKG71_RS15390 (DKG71_15390) - 3687719..3688369 (-) 651 WP_109889857.1 DedA family protein -
  DKG71_RS15395 (DKG71_15395) - 3688597..3688884 (+) 288 WP_018093045.1 heavy-metal-associated domain-containing protein -
  DKG71_RS15400 (DKG71_15400) - 3689431..3690720 (-) 1290 WP_109889859.1 citrate synthase -
  DKG71_RS15405 (DKG71_15405) recD/recD2/recDB 3690897..3693110 (-) 2214 WP_109889861.1 ATP-dependent RecD-like DNA helicase Machinery gene
  DKG71_RS15410 (DKG71_15410) - 3693401..3694258 (-) 858 WP_109889863.1 sugar phosphate isomerase/epimerase family protein -
  DKG71_RS15415 (DKG71_15415) - 3694255..3695400 (-) 1146 WP_162596880.1 dihydrodipicolinate synthase family protein -
  DKG71_RS15420 (DKG71_15420) - 3695397..3696548 (-) 1152 WP_093646338.1 Gfo/Idh/MocA family oxidoreductase -
  DKG71_RS15425 (DKG71_15425) - 3696715..3697698 (+) 984 WP_109889866.1 bifunctional helix-turn-helix transcriptional regulator/GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79348.66 Da        Isoelectric Point: 6.7852

>NTDB_id=253993 DKG71_RS15405 WP_109889861.1 3690897..3693110(-) (recD/recD2/recDB) [Streptomyces sp. NEAU-S7GS2]
MVNAAVVEGVLERITYANEENGYTVARVDTGRGSGDLLTVVGALLGAQPGESLRMEGRWGSHPQYGKQFTVENYTTVLPA
TIQGIRRYLGSGLIKGIGPRIADRIVEHFGTDTLDIIEREPARLVEVPGLGPKRTKLIGAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKKYGDAAISVTRNEPYRLAADVWGIGFLTADRIAQSVGIPHDSPDRVKAGLQYALSQSTDQGHCFLPEEQL
IADAVKLLQVDTGLVIDCLGELAADPEGVVREQVPGGADGAPPVTAVYLVPFHRAEISLSGRLTRLLRTDEDRMPAFRDV
DWDKALAWLARRTGAELAPEQQQAVRLALTQKVAVLTGGPGCGKSFTVRSVVELARAKKATVVLAAPTGRAAKRLSELTG
AEASTVHRLLELKPGGDAAYDADRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLLVGDVDQLPSVGAGEVLRDLLD
GSGPVPAVRLTRIFRQAQQSGVVTNAHRINSGVPPLTSGMTDFFLFAEEDAEEAGRLTVDVVARRIPAKFGLDPRRDVQV
LTPMHRGPAGAGALNGLLQQAVTPARPDLPERRFGGRVFRVGDKVTQIRNNYEKGRNGVFNGTVGVVTALDGDEQRLTVR
TDEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKRLVVLVGSRKALGQAVRTV
SAGRRCTALDHRLAGAM

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=253993 DKG71_RS15405 WP_109889861.1 3690897..3693110(-) (recD/recD2/recDB) [Streptomyces sp. NEAU-S7GS2]
ATGGTCAACGCAGCCGTCGTCGAAGGGGTCCTGGAGCGGATCACCTACGCCAACGAGGAGAACGGCTATACGGTCGCGCG
GGTCGACACGGGCCGCGGCTCGGGCGATCTGCTGACTGTCGTCGGCGCGCTGCTCGGGGCGCAGCCGGGGGAGTCGCTGC
GCATGGAGGGCCGCTGGGGCTCCCACCCCCAGTACGGCAAGCAGTTCACGGTCGAGAACTACACCACCGTCCTGCCCGCC
ACCATCCAGGGCATCCGCCGCTATCTGGGCTCCGGACTCATCAAGGGCATCGGCCCGCGGATCGCGGACCGCATCGTCGA
GCACTTCGGCACGGACACCCTCGACATCATCGAGCGCGAGCCCGCCCGCCTCGTCGAGGTACCGGGCCTGGGCCCCAAGC
GGACGAAGCTGATCGGCGCGGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTCATGGTCTTCCTCCAGGGCGTCGGGGTG
TCCACCTCCATCGCGGTGCGGATCTACAAGAAGTACGGTGACGCCGCCATCTCCGTCACCCGCAACGAGCCCTACCGCCT
GGCCGCCGACGTCTGGGGCATCGGCTTCCTGACCGCCGACCGCATCGCCCAGTCCGTGGGCATTCCGCACGACAGCCCGG
ACCGGGTCAAGGCGGGCCTGCAGTACGCCCTGTCGCAGTCCACCGACCAGGGCCACTGCTTCCTCCCCGAGGAGCAACTG
ATCGCCGACGCGGTGAAGTTGCTCCAGGTCGACACCGGACTGGTCATCGACTGCCTGGGCGAGCTGGCCGCCGACCCGGA
GGGCGTGGTCCGCGAGCAGGTACCCGGCGGCGCGGACGGTGCGCCGCCGGTCACCGCCGTCTATCTGGTGCCGTTCCACC
GCGCCGAGATCTCCCTGTCGGGCAGGCTGACCCGGCTGCTGCGGACGGACGAGGACCGGATGCCGGCGTTCCGGGACGTC
GACTGGGACAAGGCGCTGGCGTGGCTGGCGCGGCGGACCGGCGCTGAGCTGGCCCCCGAGCAGCAGCAGGCGGTGCGGCT
GGCGCTGACGCAGAAGGTCGCGGTGCTCACCGGCGGGCCGGGCTGCGGCAAGTCCTTCACGGTCCGGTCCGTCGTCGAGC
TGGCCCGCGCCAAGAAGGCCACGGTGGTGCTGGCGGCGCCCACGGGCCGGGCGGCCAAGCGGCTCTCGGAGCTGACCGGG
GCGGAGGCCTCCACGGTCCACCGCCTCCTGGAGCTCAAGCCGGGCGGGGACGCCGCCTATGACGCGGACCGGCCGCTGGA
CGCCGATCTGGTGGTCGTCGACGAGGCGTCGATGCTGGATCTGCTGCTCGCCAACAAGCTGGTCAAGGCGGTGCCGCCGG
GCGCCCATCTGCTGCTGGTCGGGGATGTCGACCAGCTGCCGTCGGTGGGCGCGGGCGAGGTGCTGCGCGATCTGCTCGAC
GGGTCCGGCCCCGTGCCGGCGGTCCGGCTGACCAGGATCTTCCGCCAGGCCCAGCAGTCCGGGGTGGTCACCAACGCCCA
CCGCATCAACTCCGGTGTGCCGCCCCTGACGTCCGGAATGACGGACTTCTTCCTGTTCGCCGAGGAGGACGCCGAAGAGG
CCGGGCGGCTGACCGTGGATGTCGTGGCCCGCCGCATCCCGGCGAAGTTCGGTCTCGACCCGCGCCGGGACGTCCAGGTG
CTCACCCCCATGCACCGCGGTCCGGCCGGCGCGGGAGCCCTGAACGGCCTGCTCCAGCAGGCCGTCACCCCGGCCCGCCC
CGATCTGCCCGAGCGCCGCTTCGGCGGCCGGGTCTTCCGTGTCGGCGACAAGGTCACTCAGATCAGGAACAATTATGAAA
AGGGCCGTAATGGCGTCTTCAACGGCACGGTCGGCGTGGTCACCGCACTGGACGGCGACGAGCAGCGACTGACCGTGCGC
ACGGACGAGGACGAGGAGGTTCCCTACGACTTCGACGAACTCGATGAACTCGCCCATGCCTATGCCGTGACGATCCACCG
CTCGCAGGGTAGTGAGTATCCAGCGGTGGTGATTCCGGTCACCACCAGTGCCTGGATGATGCTGCAGCGCAATCTGCTGT
ATACCGCCGTGACCCGGGCAAAGCGTTTGGTGGTGCTGGTCGGCTCCCGGAAAGCCCTGGGACAGGCCGTACGCACGGTA
TCCGCCGGTCGGCGGTGTACGGCGCTGGATCACCGGCTCGCCGGTGCGATGTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(336-515)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

Helix-hairpin-helix domain (HHH_5)

(94-138)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-707)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-640)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

34.771

100

0.361