Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DF184_RS04430 Genome accession   NZ_CP029398
Coordinates   876379..878121 (+) Length   580 a.a.
NCBI ID   WP_044675023.1    Uniprot ID   -
Organism   Streptococcus suis strain HN105     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 871379..883121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS04410 (DF184_04410) - 871948..872766 (+) 819 WP_079394221.1 NAD kinase -
  DF184_RS04415 (DF184_04415) - 872766..873659 (+) 894 WP_044675025.1 RluA family pseudouridine synthase -
  DF184_RS04420 (DF184_04420) pta 873677..874651 (+) 975 WP_012775151.1 phosphate acetyltransferase -
  DF184_RS04425 (DF184_04425) - 874653..876392 (+) 1740 WP_044675024.1 ABC transporter ATP-binding protein -
  DF184_RS04430 (DF184_04430) rcrQ 876379..878121 (+) 1743 WP_044675023.1 ABC transporter ATP-binding protein Regulator
  DF184_RS04435 (DF184_04435) - 878105..878497 (+) 393 WP_029743826.1 PaaI family thioesterase -
  DF184_RS04440 (DF184_04440) mutY 878731..879891 (+) 1161 WP_061754897.1 A/G-specific adenine glycosylase -
  DF184_RS04445 (DF184_04445) - 880555..881355 (-) 801 WP_044675021.1 XRE family transcriptional regulator -
  DF184_RS04450 (DF184_04450) - 881486..881956 (+) 471 WP_044675020.1 hypothetical protein -
  DF184_RS04455 (DF184_04455) - 881976..882518 (+) 543 WP_044667664.1 hypothetical protein -
  DF184_RS11005 - 882693..882833 (-) 141 WP_171992873.1 hypothetical protein -

Sequence

Protein


Download         Length: 580 a.a.        Molecular weight: 64577.64 Da        Isoelectric Point: 5.0940

>NTDB_id=253163 DF184_RS04430 WP_044675023.1 876379..878121(+) (rcrQ) [Streptococcus suis strain HN105]
MRQSSFKELVRLVLHQPLRMSLMLVGTLVQVLLTVYLPILIGQAVDAVLIADVQVLLGILGKMVMVILLNTLVQWYLPLV
TNRLVYGMVADLREQVYVKLHQMPLSYLDRQSVGDLVARFSSDSEQLTNGLLMIFNQFFIGILTIFLTIFTMARLDLTMM
LLVVALTPVSLLVARYIAKKSYGYYRQQTQARGKQSQHLEESISQLTLVQSFNAQEQFTQGFQVVNDQYATYSQQAIFAS
STVNPSTRFINAIIYALLAGLGALRIMTGNFTVGALTTFLNYASQYSKPFNDISSVLSELQSALACADRLFAILALDSID
DQAEREIDSEELKGAISFENVSFSYSPDRSLIEQLNINVKSGQKVAIVGPTGAGKSTMINLLMRFYDVTAGQITLDGVPI
SQYSREDLRRQIGMVLQETWIKSGTIHDNIAYGYPNATRELVIEAAKAANADFFIRQLPQGYDTVLADGGEALSQGQRQL
LSIARVFVKIPKILILDEATSSIDTRTEILVQEAFAKLMEGRTSFIIAHRLSTIQSADLILVMVDGKIVEQGNHEALMAE
QGVYYQMQTSQQTEEDESVR

Nucleotide


Download         Length: 1743 bp        

>NTDB_id=253163 DF184_RS04430 WP_044675023.1 876379..878121(+) (rcrQ) [Streptococcus suis strain HN105]
ATGAGACAATCTAGTTTTAAGGAACTGGTCAGATTGGTTTTACACCAGCCCCTTCGAATGTCCTTGATGTTGGTGGGAAC
TTTGGTGCAAGTCCTTCTGACAGTTTATCTGCCTATCTTGATTGGTCAGGCAGTTGATGCAGTATTGATAGCGGATGTTC
AGGTCTTGCTCGGTATCTTAGGCAAAATGGTAATGGTTATCTTGCTTAATACGCTGGTGCAATGGTACTTACCTTTGGTA
ACCAATCGCTTGGTTTACGGAATGGTGGCCGATTTGCGTGAACAGGTCTATGTGAAGCTGCACCAGATGCCCCTATCTTA
TCTTGATCGTCAATCAGTCGGTGATTTGGTGGCTCGTTTTTCAAGTGATAGTGAGCAATTAACAAATGGTCTCTTGATGA
TTTTTAATCAATTTTTCATTGGTATCTTGACTATTTTCCTAACTATTTTCACTATGGCTAGGCTTGACTTGACGATGATG
TTGCTGGTTGTGGCATTAACTCCAGTTTCTCTGCTTGTGGCACGCTATATCGCTAAGAAATCCTATGGTTATTATAGACA
ACAGACTCAGGCACGTGGGAAGCAATCTCAGCATTTGGAAGAGTCCATCAGTCAATTGACACTGGTTCAATCTTTCAATG
CTCAAGAGCAATTTACGCAAGGTTTTCAAGTTGTGAATGACCAGTATGCGACCTATTCCCAACAGGCTATCTTTGCCTCT
TCAACGGTCAATCCAAGCACTCGCTTTATCAATGCTATTATTTATGCCTTACTTGCAGGACTTGGAGCTCTGAGAATTAT
GACAGGGAATTTCACAGTGGGGGCACTGACAACTTTTCTCAATTATGCTAGTCAGTACAGCAAGCCTTTTAATGATATTT
CCTCGGTCCTATCGGAATTGCAGAGCGCCTTAGCTTGTGCAGACAGACTGTTTGCTATCTTGGCTTTAGATAGCATTGAC
GATCAGGCTGAGCGGGAAATCGATTCGGAGGAGTTGAAGGGAGCTATTTCCTTTGAAAATGTGTCTTTCTCTTATAGCCC
TGACCGTTCTCTTATAGAACAGTTGAACATTAATGTCAAATCTGGCCAAAAGGTAGCCATTGTTGGACCTACTGGTGCTG
GTAAATCAACCATGATTAACCTGCTTATGCGTTTCTACGATGTAACGGCTGGTCAAATTACTTTAGATGGGGTTCCGATT
AGCCAGTACAGTCGTGAGGATCTTCGCAGACAGATTGGGATGGTTTTACAGGAGACATGGATCAAATCTGGTACCATTCA
TGATAATATTGCCTATGGCTATCCAAATGCCACGCGGGAATTGGTCATTGAGGCGGCTAAGGCAGCTAATGCAGACTTCT
TTATTCGTCAGCTTCCGCAGGGGTACGATACAGTTTTGGCAGATGGAGGTGAAGCCTTATCCCAGGGACAACGTCAGCTT
TTGTCTATTGCGCGTGTCTTTGTTAAAATACCTAAAATCCTGATTTTAGATGAGGCGACTTCCTCTATTGATACACGGAC
AGAAATTTTAGTACAGGAAGCATTTGCCAAATTGATGGAAGGACGGACCAGCTTTATTATTGCTCATCGCCTATCAACCA
TTCAATCAGCTGACTTGATTTTGGTCATGGTGGACGGAAAAATTGTTGAACAAGGGAATCATGAAGCATTGATGGCTGAA
CAAGGCGTTTATTATCAAATGCAAACAAGTCAGCAGACAGAGGAGGATGAAAGTGTTAGATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(22-289)

ABC transporter (ABC_tran)

(353-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.624

97.759

0.378