Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DF184_RS01890 Genome accession   NZ_CP029398
Coordinates   366667..367455 (+) Length   262 a.a.
NCBI ID   WP_023369388.1    Uniprot ID   -
Organism   Streptococcus suis strain HN105     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 361667..372455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS01865 (DF184_01865) - 362284..363243 (-) 960 WP_004195766.1 asparaginase -
  DF184_RS11080 - 363313..364678 (+) 1366 Protein_322 Cof-type HAD-IIB family hydrolase -
  DF184_RS01880 (DF184_01880) - 364694..365146 (-) 453 WP_004195772.1 universal stress protein -
  DF184_RS01885 (DF184_01885) - 365301..366515 (+) 1215 WP_044673542.1 pyridoxal phosphate-dependent aminotransferase -
  DF184_RS01890 (DF184_01890) codY 366667..367455 (+) 789 WP_023369388.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DF184_RS01895 (DF184_01895) - 367457..368008 (+) 552 WP_044673550.1 isochorismatase family cysteine hydrolase -
  DF184_RS01900 (DF184_01900) rplS 368274..368621 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  DF184_RS01905 (DF184_01905) - 368809..369483 (+) 675 WP_012774968.1 hydrolase -
  DF184_RS01910 (DF184_01910) gatC 369700..370002 (+) 303 WP_011921930.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  DF184_RS01915 (DF184_01915) gatA 370002..371468 (+) 1467 WP_024401542.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29334.37 Da        Isoelectric Point: 4.6190

>NTDB_id=253143 DF184_RS01890 WP_023369388.1 366667..367455(+) (codY) [Streptococcus suis strain HN105]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMNYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=253143 DF184_RS01890 WP_023369388.1 366667..367455(+) (codY) [Streptococcus suis strain HN105]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCCATTGCTGAGCATTTATCAGCTATTATTGACTGCAACTCGTGCATCATTAATAGTGAAGGTGAAGTTTTGG
GATACCACATGAACTATGAGACGAACAATGATCGTGTGGAAGAATTTTTCCAAAATAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCACG
ATCGACTTATCCAAACGGGCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACGCTATCTTACTCAGA
AATGAAAGCAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

59.16

100

0.592
  codY Bacillus subtilis subsp. subtilis str. 168

52.846

93.893

0.496