Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CSE15_RS08060 Genome accession   NZ_CP024204
Coordinates   1561037..1561816 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain P-10     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1556037..1566816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSE15_RS08040 (CSE15_08060) trmFO 1556741..1558045 (+) 1305 WP_099496507.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CSE15_RS08045 (CSE15_08065) xerC 1558108..1559025 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  CSE15_RS08050 (CSE15_08070) hslV 1559040..1559585 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  CSE15_RS08055 (CSE15_08075) hslU 1559602..1561002 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  CSE15_RS08060 (CSE15_08080) codY 1561037..1561816 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CSE15_RS08065 (CSE15_08085) flgB 1562105..1562494 (+) 390 WP_198406498.1 flagellar basal body rod protein FlgB -
  CSE15_RS08070 (CSE15_08090) flgC 1562494..1562946 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  CSE15_RS08075 (CSE15_08095) fliE 1562958..1563275 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  CSE15_RS08080 (CSE15_08100) fliF 1563325..1564917 (+) 1593 WP_007499608.1 flagellar basal-body MS-ring/collar protein FliF -
  CSE15_RS08085 (CSE15_08105) fliG 1564929..1565945 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  CSE15_RS08090 (CSE15_08110) fliH 1565938..1566702 (+) 765 WP_017367245.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=252968 CSE15_RS08060 WP_007499612.1 1561037..1561816(+) (codY) [Bacillus altitudinis strain P-10]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=252968 CSE15_RS08060 WP_007499612.1 1561037..1561816(+) (codY) [Bacillus altitudinis strain P-10]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTGCCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGCAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment