Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CS376_RS08890 Genome accession   NZ_CP024203
Coordinates   1720756..1721535 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain NKG-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1715756..1726535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS376_RS08870 trmFO 1716443..1717750 (+) 1308 WP_032871468.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CS376_RS08875 xerC 1717820..1718737 (+) 918 WP_032871470.1 tyrosine recombinase XerC -
  CS376_RS08880 hslV 1718753..1719298 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  CS376_RS08885 hslU 1719315..1720718 (+) 1404 WP_007409775.1 HslU--HslV peptidase ATPase subunit -
  CS376_RS08890 codY 1720756..1721535 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CS376_RS08895 flgB 1721889..1722278 (+) 390 WP_099566739.1 flagellar basal body rod protein FlgB -
  CS376_RS08900 flgC 1722278..1722730 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  CS376_RS08905 fliE 1722741..1723061 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  CS376_RS08910 fliF 1723104..1724714 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  CS376_RS08915 fliG 1724727..1725743 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  CS376_RS08920 fliH 1725736..1726491 (+) 756 WP_099566740.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=252901 CS376_RS08890 WP_003154263.1 1720756..1721535(+) (codY) [Bacillus velezensis strain NKG-1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=252901 CS376_RS08890 WP_003154263.1 1720756..1721535(+) (codY) [Bacillus velezensis strain NKG-1]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATCGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment