Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   B9S64_RS10525 Genome accession   NZ_CP029342
Coordinates   2374741..2376972 (-) Length   743 a.a.
NCBI ID   WP_103491598.1    Uniprot ID   -
Organism   Streptomyces sp. SM18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2369741..2381972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9S64_RS10515 (B9S64_10515) - 2372174..2373079 (+) 906 WP_103491600.1 alpha/beta fold hydrolase -
  B9S64_RS10520 (B9S64_10520) - 2373245..2374543 (-) 1299 WP_103491599.1 citrate synthase -
  B9S64_RS10525 (B9S64_10525) recD/recD2/recDB 2374741..2376972 (-) 2232 WP_103491598.1 ATP-dependent RecD-like DNA helicase Machinery gene
  B9S64_RS10530 (B9S64_10530) - 2377196..2378023 (-) 828 WP_203631799.1 IclR family transcriptional regulator -
  B9S64_RS10535 (B9S64_10535) - 2378140..2378856 (-) 717 WP_103491597.1 3-oxoacid CoA-transferase subunit B -
  B9S64_RS10540 (B9S64_10540) - 2378856..2379611 (-) 756 WP_103491596.1 CoA transferase subunit A -
  B9S64_RS10545 (B9S64_10545) - 2379688..2380482 (-) 795 WP_103491595.1 HpcH/HpaI aldolase/citrate lyase family protein -
  B9S64_RS10550 (B9S64_10550) - 2380479..2381387 (-) 909 WP_103491594.1 hypothetical protein -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 80110.59 Da        Isoelectric Point: 6.9094

>NTDB_id=252840 B9S64_RS10525 WP_103491598.1 2374741..2376972(-) (recD/recD2/recDB) [Streptomyces sp. SM18]
MSNTAVLEGVLERITYANEENGYTVARVDTGRGSGDLLTVVGSLLGAQPGESLRMEGRWASHPQFGKQFQVDNYTTILPA
TIQGIRRYLGSGLIKGIGPVMADRITTHFGVDTLDVIERHPERLVEVPRLGPKRTKMIAAAWEEQKAIKEVMVFLQSVGV
STSIAVRIYKKYGDASISVVKNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQSTDQGHCFLPEERL
IADGVKLLQVDTGLVIECLAELAEDPEGVVREKVPGPEDGALVTAVYLVPFHRAEISLAAQVRRLLHTPEDRMPAFQGVD
WDTALSWLARRTGATLAPEQQAAVRLALSRKVAVLTGGPGCGKSFTVRSVVELARAKNAKVVLAAPTGRAAKRLSELTGA
EASTVHRLLELKPGGDAAYDRERPLDADLVVVDEASMLDLLLANKLVKAVAPGAHLLLVGDVDQLPSVGAGEVLRDLLAE
DGPVPSVRLTTIFRQAQQSGVVTNAHRINAGLPPHTQGLSDFFLFVEDETEDAGVLAVDVAARRIPAKFGLNPRRDVQVL
APMHRGPAGAGHLNGLLQQAITPGRPDLPEKRFGGRVFRVGDKVTQIRNNYEKGANGVFNGTVGVVTALDTDEQTLTVLT
DEDEEIGYDFDELDELSHAYAMTIHRSQGSEYPAVVVPVTTSAWMMLQRNLLYTAVTRAKKLVVLVGSRRAIGQAVRTVS
AGRRCTGLAFRLRGGGTGDFAEK

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=252840 B9S64_RS10525 WP_103491598.1 2374741..2376972(-) (recD/recD2/recDB) [Streptomyces sp. SM18]
ATGTCCAACACCGCCGTGCTCGAAGGCGTCCTGGAGCGGATCACCTACGCCAACGAGGAGAACGGATACACCGTCGCCCG
CGTCGACACCGGCCGGGGCAGCGGGGACCTGCTCACCGTCGTCGGGTCGCTGCTGGGCGCGCAGCCCGGTGAGTCCCTGC
GGATGGAGGGGCGTTGGGCCTCGCACCCGCAGTTCGGCAAACAGTTCCAGGTCGACAACTACACGACGATCCTCCCGGCC
ACGATCCAGGGCATCCGCCGCTACCTCGGCTCCGGCCTGATCAAGGGCATCGGCCCCGTCATGGCCGACCGCATCACCAC
CCACTTCGGCGTGGACACCCTGGACGTCATCGAGCGGCACCCCGAGCGGCTGGTGGAGGTGCCCAGGCTCGGGCCCAAGC
GCACGAAGATGATCGCCGCGGCCTGGGAGGAGCAGAAGGCGATCAAGGAGGTCATGGTCTTCCTCCAGAGCGTCGGCGTC
TCGACGTCCATCGCCGTCCGTATCTACAAGAAGTACGGGGACGCCTCGATCTCCGTCGTGAAGAACCAGCCCTACCGGCT
GGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACCGCATCGCCCAGGCCGTCGGCATCCCGCACGACAGCCCGG
AACGCGTCAAGGCGGGCCTCCAGTACGCGCTGTCGCAGTCCACCGACCAGGGCCACTGCTTCCTCCCCGAGGAGCGGCTG
ATCGCGGACGGGGTGAAGCTGCTCCAGGTGGACACGGGGCTCGTCATCGAGTGCCTGGCCGAGCTGGCCGAGGACCCGGA
GGGCGTCGTACGGGAGAAGGTGCCGGGCCCGGAGGACGGCGCGCTCGTCACCGCCGTCTACCTGGTGCCCTTCCACCGCG
CCGAGATCTCCCTCGCCGCCCAGGTGCGGCGCCTGCTGCACACGCCGGAGGACCGGATGCCGGCCTTCCAGGGCGTCGAC
TGGGACACGGCGCTGTCCTGGCTCGCACGGCGTACGGGGGCCACGCTGGCGCCCGAGCAGCAGGCCGCCGTACGGCTCGC
GCTCAGCCGGAAGGTCGCCGTCCTCACCGGTGGTCCGGGGTGCGGCAAGTCGTTCACCGTACGGTCCGTGGTGGAGCTGG
CCCGCGCCAAGAACGCCAAGGTGGTGCTGGCCGCTCCCACCGGCCGGGCGGCGAAGCGGCTCTCCGAGCTGACCGGTGCC
GAGGCGTCCACCGTGCACCGGCTGCTGGAGCTGAAGCCGGGCGGGGACGCCGCGTACGACCGTGAACGGCCGCTGGACGC
CGACCTGGTGGTCGTGGACGAGGCGTCGATGCTCGATCTGCTCCTCGCCAACAAACTCGTGAAGGCGGTGGCACCCGGTG
CCCACCTCCTCCTGGTCGGGGACGTGGACCAGCTGCCCTCGGTCGGCGCGGGGGAGGTCCTGCGCGATCTGCTCGCGGAG
GACGGGCCGGTGCCCTCGGTCCGGCTGACCACGATCTTCCGGCAGGCCCAGCAGTCCGGTGTGGTCACCAACGCCCACCG
CATCAACGCCGGTCTCCCGCCGCACACCCAGGGGCTGAGCGACTTCTTCCTGTTCGTGGAGGACGAGACGGAGGACGCGG
GGGTGCTCGCCGTGGACGTCGCGGCCCGCCGTATCCCCGCCAAGTTCGGGCTGAACCCCCGCCGTGACGTGCAGGTGCTC
GCCCCGATGCACCGGGGTCCGGCCGGTGCGGGCCATCTGAACGGCCTCCTCCAGCAGGCCATCACCCCGGGCCGCCCCGA
CCTGCCGGAGAAGCGGTTCGGCGGCCGGGTCTTCCGGGTCGGTGACAAGGTCACCCAGATCCGGAACAACTACGAGAAGG
GGGCGAACGGCGTCTTCAACGGCACGGTCGGCGTCGTCACCGCCCTGGACACGGACGAACAGACGCTCACCGTCCTCACC
GACGAGGACGAGGAGATCGGGTACGACTTCGACGAGCTCGACGAGCTGTCCCACGCCTACGCCATGACGATCCATCGCTC
CCAGGGCAGCGAGTACCCGGCGGTCGTCGTCCCCGTCACCACCAGCGCGTGGATGATGCTCCAGCGGAACCTGCTGTACA
CGGCCGTGACCAGGGCGAAGAAGCTCGTCGTCCTGGTCGGCTCGCGCAGGGCGATCGGCCAGGCGGTCCGCACGGTTTCC
GCCGGCAGACGCTGTACGGGGCTGGCTTTCCGGCTGCGGGGAGGCGGCACAGGAGACTTCGCGGAAAAATGA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(335-514)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-638)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(658-706)

Helix-hairpin-helix domain (HHH_5)

(94-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.117

100

0.362