Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DG474_RS07045 Genome accession   NZ_CP029257
Coordinates   1439564..1440352 (-) Length   262 a.a.
NCBI ID   WP_000940726.1    Uniprot ID   -
Organism   Streptococcus oralis strain CCUG 53468     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1434564..1445352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS07020 (DG474_07145) vex2 1435870..1436517 (-) 648 WP_000173735.1 ABC transporter ATP-binding subunit Vex2 -
  DG474_RS07025 (DG474_07150) - 1436530..1437807 (-) 1278 WP_125391129.1 ABC transporter permease -
  DG474_RS07030 (DG474_07155) - 1437941..1438552 (-) 612 WP_084860171.1 CPBP family intramembrane glutamic endopeptidase -
  DG474_RS07040 (DG474_07165) - 1438989..1439564 (-) 576 WP_255777819.1 cysteine hydrolase family protein -
  DG474_RS07045 (DG474_07170) codY 1439564..1440352 (-) 789 WP_000940726.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DG474_RS07050 (DG474_07175) - 1440635..1442212 (-) 1578 WP_255777821.1 DEAD/DEAH box helicase -
  DG474_RS07055 (DG474_07180) - 1442409..1443635 (-) 1227 WP_255777822.1 OFA family MFS transporter -
  DG474_RS07060 (DG474_07185) - 1443828..1445144 (+) 1317 WP_255777824.1 FAD-containing oxidoreductase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29713.07 Da        Isoelectric Point: 5.2488

>NTDB_id=252543 DG474_RS07045 WP_000940726.1 1439564..1440352(-) (codY) [Streptococcus oralis strain CCUG 53468]
MAHLLEKTRKITSILKRSEEQLQDELPYNAITRQLADIIDCNACIVNNKGRLLGYFMRYKTNNDRVEQFFQTKTFPEVYV
QGANMIYDTEANLPVEHDLTIFPVESRADFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILAELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLISDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=252543 DG474_RS07045 WP_000940726.1 1439564..1440352(-) (codY) [Streptococcus oralis strain CCUG 53468]
ATGGCACATTTATTAGAAAAAACAAGAAAAATCACGTCTATTCTAAAGCGCTCAGAAGAGCAACTCCAAGATGAACTTCC
TTACAATGCGATCACACGCCAGTTAGCTGATATTATTGACTGTAACGCTTGTATTGTGAATAACAAGGGACGTCTCTTGG
GCTACTTTATGCGTTATAAGACAAATAATGACCGTGTAGAACAGTTCTTCCAAACCAAAACCTTCCCTGAGGTCTATGTA
CAAGGGGCAAACATGATTTATGATACGGAAGCCAATCTTCCTGTTGAACATGATTTGACCATTTTCCCTGTGGAGAGCCG
TGCGGACTTTCCAGATGGGTTGACAACCATCGCTCCGATTCATGTATCAGGGATTCGCCTAGGTTCGTTGATCATTTGGC
GCAATGATAAGAAATTTGAAGATGAAGATTTGATCCTTGTCGAGATTGCGAGCACGGTTGTGGGAATTCAACTATTGAAC
TTCCAACGTGAAGAAGATGAGAAAAATATTCGCCGTCGTACAGCTGTTACTATGGCGGTCAACACCCTTTCCTATTCAGA
ACTTCGTGCCGTATCAGCTATTTTAGCTGAATTGGATGGAAATGAAGGGCAGTTGACTGCGTCTGTTATTGCAGACCGTA
TTGGCATTACACGCTCAGTGATTGTCAATGCGCTTCGTAAATTGGAGTCTGCGGGAATTATTGAGAGTCGTTCACTAGGA
ATGAAGGGGACCTATCTCAAGGTATTGATTTCAGATATTTTTGAGGAAGTGAAAAAGAGGGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

63.359

100

0.634
  codY Bacillus subtilis subsp. subtilis str. 168

50.407

93.893

0.473