Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DG474_RS00650 Genome accession   NZ_CP029257
Coordinates   133508..135274 (+) Length   588 a.a.
NCBI ID   WP_255778300.1    Uniprot ID   -
Organism   Streptococcus oralis strain CCUG 53468     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 128508..140274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS00630 (DG474_00630) - 129149..129436 (-) 288 WP_084859229.1 hypothetical protein -
  DG474_RS00635 (DG474_00635) galU 129656..130555 (-) 900 WP_000811023.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  DG474_RS00640 (DG474_00640) - 130577..131593 (-) 1017 WP_255778298.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  DG474_RS00645 (DG474_00645) - 131800..133506 (+) 1707 WP_255778299.1 ABC transporter ATP-binding protein -
  DG474_RS00650 (DG474_00650) rcrQ 133508..135274 (+) 1767 WP_255778300.1 ABC transporter ATP-binding protein Regulator
  DG474_RS00655 (DG474_00655) - 135414..136103 (+) 690 WP_173259629.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  DG474_RS00660 (DG474_00660) - 136272..137621 (+) 1350 WP_000018244.1 glucose-6-phosphate isomerase -
  DG474_RS00665 (DG474_00665) gltX 137749..139209 (+) 1461 WP_255778301.1 glutamate--tRNA ligase -
  DG474_RS00670 (DG474_00670) - 139222..139656 (+) 435 WP_255778302.1 cytidine deaminase -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65367.50 Da        Isoelectric Point: 4.9620

>NTDB_id=252483 DG474_RS00650 WP_255778300.1 133508..135274(+) (rcrQ) [Streptococcus oralis strain CCUG 53468]
MKTVRFFWNYFKVYKFSFVIVILMVAVATIAQALFPVFSGQAVTELANLVLAYQNGTSELAWQSLSALMLNLALVVLALV
VSSLIYMTLMTRVIAESTNEMRKGLFGKLSRLTVSFFDRHQDGDILSRFTSDLDNILQAFNESLVQVMSNIALYIGLIFV
MFSRNVTLALITVASTPVAFLMLVFIVKMARKYTNLQQKEVGKLNAYMDESISGQKAVIVQGIQDDIVAGFVEQNERVRK
ATFKGRMFSGILFPVMNGMSLVNTAIVIFAGSAVLLNDPSIETTTALGLIVMFTQFSQQYYQPIIQVAASWGSLQLAFTG
ADRIQEMFDAEEEIRPQNAPAFTELREGVEISHIDFSYVPDKPILKDVSISAPKGQMIAVVGPTGSGKTTIMNLINRFYD
VDAGSISFDGKDIRDYDLDSLRSKVGIVLQDSVLFSGTIRDNIRFGVPDASQEMVEAATKATHIHDYIESLPDKYDTLID
DEQNIFSTGQKQLISIARTLMTDPQVLILDEATSNVDTVTESKIQHAMEAVVAGRTSFVIAHRLKTILNADQIIVLKDGE
VIERGNHHELLKLGGFYSELYHNQFVFE

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=252483 DG474_RS00650 WP_255778300.1 133508..135274(+) (rcrQ) [Streptococcus oralis strain CCUG 53468]
ATGAAAACCGTTCGATTTTTCTGGAATTATTTTAAAGTTTACAAGTTCTCCTTTGTCATTGTGATTCTGATGGTTGCAGT
TGCGACGATTGCCCAAGCCCTCTTTCCAGTTTTTTCAGGTCAAGCAGTGACGGAGCTCGCTAACCTAGTTCTAGCTTATC
AAAATGGAACTTCCGAACTAGCCTGGCAGAGTTTGTCAGCTCTGATGCTGAATCTAGCTCTTGTTGTTCTCGCCTTAGTG
GTATCCAGTTTGATTTACATGACCTTGATGACCCGTGTGATTGCTGAGTCAACAAATGAGATGCGTAAGGGCCTCTTTGG
CAAACTTTCTCGTTTGACCGTTTCTTTCTTTGACCGCCATCAGGATGGCGACATCCTTTCTCGCTTCACGAGTGACTTGG
ACAACATCCTTCAAGCCTTCAATGAAAGCTTAGTTCAGGTCATGAGCAATATTGCTCTTTACATCGGTTTGATTTTTGTC
ATGTTTTCAAGAAATGTGACACTAGCCCTGATAACAGTAGCTAGCACCCCAGTAGCCTTTCTCATGTTGGTCTTCATCGT
GAAAATGGCCCGCAAGTACACCAATCTCCAGCAAAAAGAGGTTGGGAAACTCAATGCCTACATGGACGAGAGTATTTCTG
GACAGAAAGCTGTTATCGTACAAGGAATTCAAGATGACATCGTAGCAGGCTTTGTGGAGCAAAATGAGCGCGTGCGCAAG
GCAACCTTTAAAGGGAGAATGTTCTCAGGCATCCTGTTTCCTGTTATGAATGGGATGAGCTTGGTCAATACGGCCATCGT
TATTTTTGCAGGTTCTGCGGTCCTGCTGAACGATCCAAGTATCGAAACAACGACAGCCCTAGGTTTGATCGTCATGTTTA
CCCAATTTTCTCAGCAGTACTACCAGCCAATTATCCAGGTGGCTGCGAGTTGGGGGAGCCTCCAGTTGGCCTTTACTGGA
GCGGATCGTATCCAAGAAATGTTCGATGCAGAAGAAGAGATTCGTCCGCAAAATGCGCCTGCCTTTACGGAATTGCGAGA
AGGTGTTGAAATCAGTCATATTGATTTCTCTTATGTGCCAGACAAGCCGATTTTAAAAGATGTTAGCATTTCAGCTCCTA
AGGGGCAGATGATAGCAGTTGTCGGTCCGACTGGTTCAGGGAAAACGACCATCATGAACCTTATCAATCGCTTCTACGAT
GTGGATGCAGGTAGCATTTCTTTTGATGGCAAAGACATCCGTGACTACGACTTGGACAGTCTGCGGAGCAAGGTCGGGAT
TGTCTTGCAGGATTCGGTCTTGTTTAGTGGAACGATTCGGGACAATATCCGCTTTGGTGTGCCAGATGCCAGTCAGGAAA
TGGTCGAAGCAGCTACCAAGGCAACTCATATTCATGACTATATCGAAAGCTTGCCTGACAAGTATGATACCCTTATTGAT
GATGAGCAAAATATCTTCTCGACTGGGCAGAAACAATTGATTTCCATCGCTCGGACCTTGATGACAGATCCTCAAGTCTT
AATTTTAGATGAAGCGACTTCCAATGTGGATACCGTAACAGAAAGCAAGATTCAACATGCCATGGAGGCAGTTGTAGCAG
GACGAACCAGTTTTGTCATTGCCCATCGTCTCAAGACCATCCTCAATGCCGATCAGATTATTGTCCTCAAAGATGGAGAG
GTTATTGAACGTGGAAATCATCACGAGTTGCTCAAACTCGGCGGTTTCTACTCGGAACTGTATCACAATCAATTTGTCTT
CGAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-297)

ABC transporter (ABC_tran)

(365-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

36.489

98.81

0.361