Detailed information    

insolico Bioinformatically predicted

Overview


Name   addB   Type   Machinery gene
Locus tag   CG474_RS05360 Genome accession   NZ_CP024120
Coordinates   1030398..1033910 (+) Length   1170 a.a.
NCBI ID   WP_048722281.1    Uniprot ID   A0AAX2CDJ0
Organism   Bacillus cytotoxicus strain CH_1     
Function   homologous recombination; plasmid transformation (predicted from homology)   
Homologous recombination

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 985597..1042468 1030398..1033910 within 0


Gene organization within MGE regions


Location: 985597..1042468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG474_RS05065 (CG474_005055) aceA 985597..986874 (+) 1278 WP_011983943.1 isocitrate lyase -
  CG474_RS05070 (CG474_005060) - 987205..987408 (+) 204 WP_011983944.1 cold-shock protein -
  CG474_RS05075 (CG474_005065) - 987806..988003 (+) 198 Protein_892 competence protein ComK -
  CG474_RS05080 (CG474_005070) - 988046..989479 (-) 1434 WP_016716785.1 recombinase family protein -
  CG474_RS05085 (CG474_005075) - 989511..989948 (-) 438 WP_016716786.1 ImmA/IrrE family metallo-endopeptidase -
  CG474_RS05090 (CG474_005080) - 989971..990378 (-) 408 WP_016716787.1 helix-turn-helix domain-containing protein -
  CG474_RS05095 (CG474_005085) - 990656..990856 (+) 201 WP_016716788.1 helix-turn-helix domain-containing protein -
  CG474_RS22770 - 990853..991023 (+) 171 WP_016716789.1 hypothetical protein -
  CG474_RS22775 - 991035..991187 (+) 153 WP_016716790.1 hypothetical protein -
  CG474_RS05100 (CG474_005090) - 991203..991553 (+) 351 WP_048722250.1 YqaI family protein -
  CG474_RS05105 (CG474_005095) - 991643..991960 (+) 318 WP_016716792.1 hypothetical protein -
  CG474_RS23225 (CG474_005100) - 991908..992108 (+) 201 WP_048722253.1 hypothetical protein -
  CG474_RS05115 (CG474_005105) - 992110..992301 (+) 192 WP_016716793.1 hypothetical protein -
  CG474_RS05120 (CG474_005110) - 992307..993008 (+) 702 WP_016716794.1 AAA family ATPase -
  CG474_RS05125 (CG474_005115) - 993008..993484 (+) 477 WP_016716795.1 DUF669 domain-containing protein -
  CG474_RS05130 (CG474_005120) - 993589..995943 (+) 2355 WP_016716796.1 phage/plasmid primase, P4 family -
  CG474_RS05135 (CG474_005125) - 996209..996637 (+) 429 WP_016716797.1 hypothetical protein -
  CG474_RS05140 (CG474_005130) - 996640..997179 (+) 540 WP_016716798.1 ERCC4 domain-containing protein -
  CG474_RS05145 (CG474_005135) - 997181..997465 (+) 285 WP_016716799.1 hypothetical protein -
  CG474_RS05150 (CG474_005140) - 997546..997890 (+) 345 WP_016716800.1 hypothetical protein -
  CG474_RS05155 (CG474_005145) - 997974..998174 (+) 201 WP_016716801.1 XtrA/YqaO family protein -
  CG474_RS05160 (CG474_005150) - 998277..999080 (+) 804 WP_016716802.1 hypothetical protein -
  CG474_RS05165 (CG474_005155) - 999104..1000288 (+) 1185 WP_016716803.1 helix-turn-helix domain-containing protein -
  CG474_RS05170 (CG474_005160) - 1000390..1000785 (+) 396 WP_016716804.1 ECF-type sigma factor -
  CG474_RS05175 (CG474_005165) - 1000963..1001877 (+) 915 WP_016716805.1 hypothetical protein -
  CG474_RS05180 (CG474_005170) - 1001939..1002469 (-) 531 WP_016716806.1 type II toxin-antitoxin system HicB family antitoxin -
  CG474_RS05185 (CG474_005175) - 1002565..1002768 (-) 204 WP_016716807.1 type II toxin-antitoxin system HicA family toxin -
  CG474_RS05190 (CG474_005180) - 1002970..1003209 (+) 240 WP_016716808.1 hypothetical protein -
  CG474_RS23230 (CG474_005185) - 1003223..1003429 (+) 207 Protein_918 HNH endonuclease -
  CG474_RS05200 (CG474_005190) - 1003506..1003742 (+) 237 WP_016716810.1 hypothetical protein -
  CG474_RS05205 (CG474_005195) - 1003857..1004243 (+) 387 WP_016716811.1 P27 family phage terminase small subunit -
  CG474_RS05210 (CG474_005200) - 1004240..1005958 (+) 1719 WP_016716812.1 terminase large subunit -
  CG474_RS05215 (CG474_005205) - 1005981..1007150 (+) 1170 WP_016716813.1 phage portal protein -
  CG474_RS05220 (CG474_005210) - 1007143..1007715 (+) 573 WP_016716814.1 HK97 family phage prohead protease -
  CG474_RS05225 (CG474_005215) - 1007708..1008880 (+) 1173 WP_016716815.1 phage major capsid protein -
  CG474_RS05230 (CG474_005220) - 1008898..1009077 (+) 180 WP_016716816.1 hypothetical protein -
  CG474_RS05235 (CG474_005225) - 1009070..1009363 (+) 294 WP_016716817.1 hypothetical protein -
  CG474_RS05240 (CG474_005230) - 1009350..1009694 (+) 345 WP_016716818.1 phage head closure protein -
  CG474_RS05245 (CG474_005235) - 1009687..1010043 (+) 357 WP_016716819.1 HK97 gp10 family phage protein -
  CG474_RS05250 (CG474_005240) - 1010040..1010369 (+) 330 WP_016716820.1 hypothetical protein -
  CG474_RS05255 (CG474_005245) - 1010370..1010963 (+) 594 WP_048722261.1 major tail protein -
  CG474_RS05260 (CG474_005250) - 1010970..1011326 (+) 357 WP_016716822.1 hypothetical protein -
  CG474_RS05265 (CG474_005255) - 1011557..1013014 (+) 1458 Protein_932 DUF2207 domain-containing protein -
  CG474_RS05270 (CG474_005260) - 1013239..1015419 (+) 2181 WP_016716824.1 phage tail protein -
  CG474_RS05275 (CG474_005265) - 1015461..1016936 (+) 1476 WP_016716825.1 distal tail protein Dit -
  CG474_RS05280 (CG474_005270) - 1016933..1021627 (+) 4695 WP_016716826.1 phage tail spike protein -
  CG474_RS05285 (CG474_005275) - 1021650..1022099 (+) 450 WP_016716827.1 hypothetical protein -
  CG474_RS05290 (CG474_005280) - 1022269..1022505 (+) 237 WP_000398745.1 hemolysin XhlA family protein -
  CG474_RS05295 (CG474_005285) - 1022505..1022744 (+) 240 WP_016716828.1 hypothetical protein -
  CG474_RS05300 (CG474_005290) - 1022741..1023805 (+) 1065 WP_016716829.1 N-acetylmuramoyl-L-alanine amidase -
  CG474_RS05305 (CG474_005295) - 1023844..1024386 (-) 543 WP_016716830.1 hypothetical protein -
  CG474_RS05315 (CG474_005305) - 1024769..1025617 (+) 849 WP_016716831.1 AraC family transcriptional regulator -
  CG474_RS05320 (CG474_005310) - 1025922..1026284 (-) 363 WP_016716833.1 hypothetical protein -
  CG474_RS05325 (CG474_005315) - 1026346..1026678 (-) 333 WP_016716834.1 hypothetical protein -
  CG474_RS05330 (CG474_005320) - 1026757..1027005 (-) 249 WP_048722275.1 hypothetical protein -
  CG474_RS05335 (CG474_005325) - 1027020..1027226 (-) 207 Protein_945 helix-turn-helix domain-containing protein -
  CG474_RS05340 (CG474_005330) - 1027320..1028150 (-) 831 WP_016716837.1 helix-turn-helix domain-containing protein -
  CG474_RS05345 (CG474_005335) - 1028377..1028781 (+) 405 Protein_947 competence protein ComK -
  CG474_RS23740 - 1028860..1028988 (-) 129 WP_275425714.1 hypothetical protein -
  CG474_RS05350 (CG474_005340) - 1029054..1029647 (+) 594 WP_011983946.1 TVP38/TMEM64 family protein -
  CG474_RS05355 (CG474_005345) lepB 1029708..1030274 (+) 567 WP_011983947.1 signal peptidase I -
  CG474_RS05360 (CG474_005350) addB 1030398..1033910 (+) 3513 WP_048722281.1 helicase-exonuclease AddAB subunit AddB Machinery gene
  CG474_RS05365 (CG474_005355) addA 1033910..1037635 (+) 3726 WP_048723054.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  CG474_RS05370 (CG474_005360) - 1037729..1037944 (-) 216 WP_048722283.1 spore germination protein -
  CG474_RS05375 (CG474_005365) - 1038009..1038377 (-) 369 WP_011983951.1 spore germination protein GerPE -
  CG474_RS05380 (CG474_005370) - 1038392..1038586 (-) 195 WP_011983952.1 hypothetical protein -
  CG474_RS05385 (CG474_005375) - 1038591..1039211 (-) 621 WP_011983953.1 spore germination protein GerPC -
  CG474_RS05390 (CG474_005380) - 1039272..1039478 (-) 207 WP_011983954.1 spore germination protein GerPB -
  CG474_RS05395 (CG474_005385) - 1039496..1039717 (-) 222 WP_011983955.1 spore germination protein -
  CG474_RS05400 (CG474_005390) - 1039844..1040023 (-) 180 WP_011983956.1 aspartyl-phosphate phosphatase Spo0E family protein -
  CG474_RS05405 (CG474_005395) - 1040270..1041169 (+) 900 WP_179196689.1 fumarylacetoacetate hydrolase family protein -
  CG474_RS05410 (CG474_005400) - 1041278..1042468 (-) 1191 WP_048722287.1 ornithine--oxo-acid transaminase -

Sequence


Protein


Download         Length: 1170 a.a.        Molecular weight: 134531.07 Da        Isoelectric Point: 5.3403

>NTDB_id=252239 CG474_RS05360 WP_048722281.1 1030398..1033910(+) (addB) [Bacillus cytotoxicus strain CH_1]
MSLRFVIGRAGSGKSTLCLREVQEELKERPRGKTILYLVPEQMTFQTQQALIGSEEVRASIRAQVFSFSRLAWKVLQEVG
GASRLHIDEAGVHMLLRKIIESRKEGLYVFQKAAEQNGFFEHLGGMIAEFKRYNITPSHVYEMWQQLDAHSSSAEQKLLA
NKIYDLQLLYDDFERALIGKYLDSEDYLQLLIEKLPFSEYVKDAEIYIDGFHSFSPQELEIIRQLMRCGARMTITLTVDE
KTFAQPVNELDLFYETVLTYEKVKQVAREEKVVMEKTIPLVEQPRFHSPALAHLEAHYESRPNEKFYGETSIAIHTAANL
RAEVEGVAREIRRLVAEENYRYRDIAVLLRNGESYYDVLRTLFADYDIPHFIDEKRSMSHHPLVECIRSALEIISGNWRY
DAVFRCVKTELLYPLDVKKEVMREEMDEFENYCLAYGVQGKKWTADEPWTYRRYRSLDEGNEVITDRERQMEEKMNRLRE
IVRTPIIRLQKRLKRASTVMQMCEAVYLFLEELDVPKKLEQLRVRAEESGDFLFATDHDQVWEEVMNLLDTFVEMLGEES
MSLSVFIDVMTTGLEALQFANIPPSLDQVLIANIDRSRLSNIRATFVIGANEGVMPATPTDEGMLSDEERDVLAAAGVEL
APTTRQTLLEEQFVLYQMVTRASEKLYISCPLADEEGKTLLASSFMKKIKRMFPNVKETFVTNDVNDLSRAAQISYVTTP
EVTLSYVMQQLQTWKRYGFEGDLDFWWDVYNFYVTSDEWKQKSNRVLSSLFYRNRAKKLSTAVSRILYGDKIKGSVSRME
LFNRCAYAHFAQHGLSLRERDIFKLDAPDIGELFHAALKKIADKLLREKRTWADLSIKECEHLSILVIEEIAPLLQRQIL
LSSNRHAYLKQKLQQIIFRTSLVLREHAKASGFVPVDLEVPFGMGGKDSLPPMEFTLSNGVKMEVVGRIDRVDKAEDESG
TFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVISNAGTWMKQGEVASPAGVLYFHIHNPLVEVKGDASEEEIEKEIL
KKFKMKGLVLGDADVVRLMDNKLSTGSSDIISAGLKKDGSFSARSNIASEQEFSVLQKYVHHTFETIGKDITEGVIDIAP
YKMGNKAACTFCHFRSVCQFDESLEDNQFRTLKDMKDSEAMEKIREEVGE

Nucleotide


Download         Length: 3513 bp        

>NTDB_id=252239 CG474_RS05360 WP_048722281.1 1030398..1033910(+) (addB) [Bacillus cytotoxicus strain CH_1]
ATGTCACTTCGATTTGTGATTGGAAGAGCTGGAAGTGGGAAAAGTACACTTTGTTTACGAGAAGTGCAAGAAGAGTTAAA
AGAGCGCCCAAGAGGGAAAACAATCTTGTATCTTGTTCCTGAACAAATGACATTTCAGACGCAGCAGGCGTTAATAGGAA
GTGAAGAGGTAAGAGCTTCTATTCGTGCACAAGTGTTTAGTTTTTCACGATTAGCTTGGAAAGTGTTGCAAGAAGTAGGA
GGGGCAAGTCGTCTTCATATTGATGAAGCGGGTGTGCATATGTTACTTCGCAAAATTATTGAATCGCGCAAAGAAGGATT
ATATGTGTTTCAAAAAGCCGCTGAACAAAATGGCTTCTTTGAACATCTTGGAGGTATGATTGCAGAGTTTAAACGTTACA
ATATAACGCCATCTCATGTATATGAAATGTGGCAACAGTTAGATGCGCATAGCAGTAGCGCCGAACAAAAGTTGCTGGCA
AATAAAATATATGATTTGCAGCTATTATATGATGATTTTGAACGAGCTTTAATTGGAAAGTATTTAGATTCGGAAGATTA
TTTACAGCTCCTTATTGAGAAACTGCCGTTTTCTGAGTATGTAAAGGATGCAGAAATTTATATTGATGGATTTCATTCGT
TCTCCCCGCAAGAGCTTGAAATTATAAGGCAGCTAATGAGATGCGGAGCAAGAATGACGATTACATTAACGGTGGATGAA
AAAACGTTCGCCCAGCCAGTCAATGAACTGGATTTGTTTTATGAAACAGTGCTGACGTATGAAAAAGTAAAACAAGTAGC
ACGTGAAGAGAAAGTGGTAATGGAAAAAACGATTCCGCTCGTAGAACAGCCGCGATTTCATTCTCCAGCATTAGCGCATT
TAGAAGCTCACTATGAATCGCGTCCGAACGAAAAGTTTTACGGAGAGACGAGTATTGCCATCCATACAGCTGCGAATTTA
CGAGCGGAGGTAGAAGGAGTAGCGCGAGAAATTCGTAGACTTGTTGCAGAAGAGAATTATCGATACCGCGATATTGCCGT
ACTTCTTCGGAACGGAGAAAGCTATTATGATGTGTTAAGAACATTATTTGCAGATTATGATATTCCGCATTTCATTGATG
AAAAGCGCTCGATGTCTCACCATCCGTTAGTCGAATGCATTCGTTCTGCTTTAGAAATAATTAGTGGGAATTGGCGTTAT
GATGCTGTTTTTCGCTGCGTGAAAACAGAACTTTTATATCCGCTGGATGTAAAAAAAGAAGTGATGCGTGAAGAAATGGA
TGAGTTTGAAAACTACTGTTTGGCGTATGGTGTCCAAGGTAAGAAATGGACCGCCGATGAGCCGTGGACGTATCGTCGTT
ATCGCTCTCTTGATGAGGGGAACGAGGTGATAACAGATCGTGAACGCCAAATGGAAGAGAAAATGAACCGTCTTCGTGAG
ATTGTAAGAACGCCAATCATTCGTCTGCAAAAAAGATTGAAACGTGCAAGTACTGTTATGCAAATGTGCGAAGCTGTATA
TTTATTTTTAGAGGAGCTAGATGTTCCGAAGAAATTAGAACAACTACGTGTACGTGCTGAAGAAAGCGGGGATTTCTTAT
TTGCGACAGACCATGATCAAGTGTGGGAAGAAGTGATGAATCTTCTTGATACATTTGTTGAGATGCTTGGAGAAGAAAGT
ATGTCTCTATCGGTGTTTATTGATGTGATGACGACAGGGCTTGAGGCACTTCAATTTGCCAATATCCCGCCATCGTTAGA
CCAAGTATTAATTGCAAATATCGATCGCTCTAGACTTTCAAATATTCGGGCAACATTTGTGATTGGTGCAAATGAAGGTG
TGATGCCAGCTACGCCGACAGATGAAGGGATGCTTTCTGATGAAGAAAGAGATGTTCTTGCAGCAGCGGGCGTGGAATTA
GCACCAACGACAAGACAAACGTTATTAGAAGAACAGTTTGTCTTGTATCAAATGGTGACAAGAGCATCTGAGAAACTATA
TATATCTTGTCCTCTTGCAGATGAAGAAGGAAAGACATTACTAGCTTCTAGTTTTATGAAGAAAATAAAGAGAATGTTTC
CTAATGTGAAAGAGACGTTTGTAACAAACGATGTAAACGACTTATCGCGCGCAGCACAAATTTCATATGTAACGACGCCA
GAAGTAACATTGTCATATGTGATGCAACAACTGCAAACGTGGAAGCGATACGGTTTTGAAGGTGATTTAGACTTTTGGTG
GGATGTATATAATTTCTACGTTACATCCGATGAATGGAAGCAAAAAAGCAACCGTGTATTATCCAGTTTGTTTTATCGAA
ATCGTGCGAAGAAATTAAGTACGGCTGTAAGTCGAATTTTATATGGAGATAAAATAAAAGGAAGTGTCTCTCGTATGGAA
TTATTTAATCGCTGTGCGTACGCTCATTTTGCACAGCACGGTTTATCATTGAGAGAGCGCGATATATTTAAATTAGATGC
ACCAGATATCGGGGAGCTGTTCCATGCAGCGCTAAAGAAAATTGCGGACAAGCTCTTGCGTGAAAAACGGACTTGGGCTG
ATTTATCCATAAAAGAATGTGAGCATCTTTCCATATTAGTAATAGAAGAAATTGCTCCATTATTACAAAGGCAAATTTTA
TTAAGCTCAAATCGACATGCTTATTTGAAACAAAAATTACAGCAAATTATTTTTAGAACATCGCTTGTGCTTAGGGAACA
TGCTAAGGCGAGTGGATTTGTTCCAGTTGATTTAGAAGTTCCGTTTGGTATGGGAGGCAAAGACTCATTACCACCGATGG
AATTTACATTATCAAACGGTGTGAAAATGGAAGTTGTCGGCCGGATTGATCGAGTTGATAAAGCGGAAGATGAGAGCGGT
ACGTTTCTTCGCATTATTGATTATAAATCGAGCTCGAAAGCGCTGGATTTAACAGAAGTATATTACGGATTAGCATTGCA
AATGCTGACGTATTTGGATGTCGTCATTTCTAATGCTGGTACGTGGATGAAACAGGGGGAAGTCGCATCACCAGCAGGTG
TGTTATACTTCCATATTCATAATCCACTTGTTGAGGTGAAAGGTGACGCTTCTGAAGAGGAGATTGAGAAAGAAATTTTA
AAGAAATTTAAAATGAAAGGGCTCGTGCTTGGAGATGCAGATGTTGTTCGTTTAATGGATAACAAACTATCAACAGGAAG
CTCTGACATTATTTCAGCCGGGTTAAAAAAAGACGGAAGCTTCAGCGCACGCTCTAACATCGCAAGTGAACAAGAATTTT
CTGTGCTACAAAAATACGTACACCATACGTTTGAAACGATCGGAAAAGACATTACAGAAGGTGTCATTGATATTGCTCCA
TATAAAATGGGGAATAAAGCAGCGTGCACATTTTGTCACTTCCGCTCTGTCTGCCAGTTCGATGAATCGCTGGAAGACAA
TCAGTTCCGTACATTAAAAGATATGAAAGATAGTGAAGCAATGGAGAAAATACGAGAGGAGGTCGGGGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  addB Bacillus subtilis subsp. subtilis str. 168

49.53

100

0.496


Multiple sequence alignment