Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   CG476_RS17670 Genome accession   NZ_CP024116
Coordinates   3347466..3349805 (-) Length   779 a.a.
NCBI ID   WP_048724188.1    Uniprot ID   -
Organism   Bacillus cytotoxicus strain CH_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3342466..3354805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG476_RS23545 (CG476_017610) - 3342507..3342683 (-) 177 WP_012095581.1 hypothetical protein -
  CG476_RS17645 (CG476_017615) - 3342770..3342961 (-) 192 WP_041810042.1 hypothetical protein -
  CG476_RS17650 (CG476_017620) - 3343230..3343919 (-) 690 WP_087095369.1 alpha/beta fold hydrolase -
  CG476_RS17655 (CG476_017625) dtd 3344055..3344495 (-) 441 WP_012095583.1 D-aminoacyl-tRNA deacylase -
  CG476_RS17660 (CG476_017630) relA 3344513..3346696 (-) 2184 WP_087095370.1 GTP diphosphokinase -
  CG476_RS17665 (CG476_017635) - 3346905..3347417 (-) 513 WP_012095585.1 adenine phosphoribosyltransferase -
  CG476_RS17670 (CG476_017640) recJ 3347466..3349805 (-) 2340 WP_048724188.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  CG476_RS17675 (CG476_017645) - 3349885..3350778 (-) 894 WP_048724186.1 cation diffusion facilitator family transporter -
  CG476_RS17680 (CG476_017650) secDF 3351060..3353318 (-) 2259 WP_012095588.1 protein translocase subunit SecDF -
  CG476_RS17685 (CG476_017655) - 3353619..3353900 (-) 282 WP_012095589.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 88262.09 Da        Isoelectric Point: 4.8618

>NTDB_id=252216 CG476_RS17670 WP_048724188.1 3347466..3349805(-) (recJ) [Bacillus cytotoxicus strain CH_2]
MLQPKTRWKEKTYNEELVRELASKLQLSPLVVSLFLGRGLDTEDKIMDFFNTAEQEFHDPFLLEGMDRTVERVKQAIQNG
EQILIFGDYDADGVSSTTVLFLALQELGADVEFYIPNRFTEGYGPNEEAFRWAHQAGFSLIITVDTGIAAVYEAQVAKEL
GIDLIITDHHEPPPELPEALAIIHPKLEGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLI
VQRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFLLAPRINAVGRLEDAAPAVHLLLSEDPEEAKELAEEIDELNKL
RKDIVKQITEEAIIEVECKYPPEENKVLVLAKEGWNPGVIGIVASKLVERFYRPTIVLSIDSEKQIAKGSARSIEGFDLF
ANLSDCRDLLPHFGGHPMAAGMTLHMNDVDELRRRLNEQANAVLVEEDFIPITTIDAVCKVEDVTLSAIEDMQKLAPFGV
GNPKPCIAVKDADLESIRAIGSDGSHLKMALRDGQATLDTIGFGFGAYAKEISPVAKVSVVGEVSINEWNNFKKPQLMVQ
DIAVEAWQLFDWRSMRNVEVNLAELPKEKIIIVYFSEDVLNKFSLEGYKEQLVHASAVTRLDGEYVVLLDLPKGIEELRN
IFQVGFPARIYTLFYQENNHLFSTVPTREHFKWYYSFLHQKAPFSLRQYGEQLCRHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMAEQIQKRDLTESNTYREKMNHLQLEKELVYSTYQQLYTWFETIRNHKEIEQLR

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=252216 CG476_RS17670 WP_048724188.1 3347466..3349805(-) (recJ) [Bacillus cytotoxicus strain CH_2]
GTGTTACAACCGAAAACGCGTTGGAAAGAAAAAACATATAATGAAGAACTGGTGAGGGAATTAGCAAGTAAATTGCAATT
ATCACCACTTGTTGTTTCTTTATTCCTCGGTAGAGGTTTAGATACAGAAGATAAGATTATGGATTTTTTTAATACAGCAG
AGCAAGAATTTCATGATCCATTTTTATTAGAAGGCATGGATCGGACAGTAGAGCGTGTGAAACAGGCGATCCAAAATGGA
GAGCAGATTTTAATATTTGGTGACTATGATGCAGACGGAGTCAGTAGTACAACCGTACTATTTTTAGCGCTTCAAGAATT
AGGAGCAGATGTGGAATTTTATATTCCAAACCGTTTTACGGAAGGATATGGACCAAATGAAGAGGCGTTTCGTTGGGCGC
ACCAGGCCGGTTTTTCTTTAATTATTACGGTTGATACAGGAATAGCAGCAGTATATGAGGCGCAAGTGGCAAAAGAGCTT
GGAATTGATTTAATTATTACAGATCATCATGAGCCACCGCCAGAACTGCCAGAAGCACTTGCGATTATTCATCCGAAGCT
TGAGGGTGGTGTATATCCGTTTCACTATTTAGCAGGGGTTGGTGTTGCTTTTAAAGTAGCGCATGCGTTGCTAGGGCGTG
TTCCGGAGCATTTGCTAGAAATTGCTGTTATTGGTACAGTAGCTGACTTAGTATCACTTCATGGTGAGAATAGATTAATT
GTACAGCGCGGATTAAAACATATGAGAATGACAAAAAACATCGGCTTAAAAGCACTTTTTAAAGTGGCGAATGTCTCGCA
AAGTGAAATTACAGAAGAAAGTATTGGTTTTTTGTTGGCGCCTCGTATTAATGCGGTTGGACGTTTAGAAGATGCTGCTC
CGGCAGTTCATCTTCTGCTATCAGAAGATCCAGAAGAAGCAAAAGAGCTGGCAGAAGAAATTGATGAATTAAACAAACTA
CGAAAAGATATTGTGAAACAAATTACAGAGGAAGCAATTATTGAGGTGGAATGTAAATATCCACCAGAGGAGAATAAAGT
GCTTGTTCTTGCGAAAGAAGGCTGGAACCCAGGGGTAATTGGAATTGTTGCTTCTAAATTGGTAGAACGTTTTTATCGTC
CGACGATTGTGTTAAGTATTGATTCTGAGAAACAAATTGCCAAGGGATCTGCGCGCAGTATTGAAGGGTTTGATTTGTTT
GCTAATTTATCGGATTGTAGAGATTTATTACCTCATTTTGGAGGTCATCCAATGGCAGCAGGGATGACGCTTCATATGAA
TGATGTAGATGAACTGAGACGCCGTTTGAATGAGCAAGCGAATGCAGTCTTAGTAGAGGAAGATTTTATTCCGATTACAA
CTATAGATGCCGTTTGTAAAGTAGAGGATGTCACTCTTTCAGCAATTGAAGATATGCAGAAGTTGGCACCATTTGGTGTT
GGAAATCCAAAACCATGTATCGCAGTGAAAGATGCTGATTTAGAAAGTATTCGCGCAATCGGATCAGATGGCTCTCATTT
AAAAATGGCTCTTCGGGATGGACAAGCTACGCTAGATACAATTGGTTTTGGATTTGGTGCCTATGCAAAAGAGATTTCTC
CAGTTGCGAAAGTTTCTGTTGTAGGAGAAGTATCTATTAACGAATGGAATAATTTTAAGAAACCGCAGTTAATGGTGCAA
GATATCGCAGTAGAAGCGTGGCAACTATTTGATTGGCGCAGTATGCGTAATGTAGAAGTGAATTTAGCAGAACTTCCAAA
AGAAAAAATAATTATAGTGTATTTTTCTGAAGATGTATTGAATAAATTTTCTTTAGAAGGTTATAAAGAGCAACTTGTGC
ATGCATCAGCAGTCACTCGTTTAGATGGTGAGTATGTTGTTTTACTTGACTTACCAAAAGGGATAGAAGAGTTGCGAAAT
ATATTTCAAGTTGGCTTCCCGGCTCGTATTTATACGTTATTTTATCAAGAAAATAATCATTTGTTTAGCACAGTTCCAAC
GAGAGAACACTTTAAATGGTATTACTCTTTCTTACATCAAAAAGCCCCATTTTCTTTAAGGCAATATGGCGAGCAACTAT
GCCGTCATAAAGGGTGGTCAAAAGATACAGTAAATTTCATGACACAGGTGTTTTTTGAGTTAGAATTTGTTACAATAAAA
GACGGTGTCATTTTTATGGCCGAACAAATTCAAAAGCGTGATTTAACTGAATCGAACACATATCGTGAGAAAATGAACCA
TTTACAACTTGAAAAAGAATTAGTATATAGCACATATCAACAGCTGTACACATGGTTTGAAACGATTCGTAATCATAAAG
AAATAGAACAGTTAAGATAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(455-561)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.23

99.358

0.529

Multiple sequence alignment