Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DEH83_RS06465 Genome accession   NZ_CP029207
Coordinates   1285336..1286124 (+) Length   262 a.a.
NCBI ID   WP_003070508.1    Uniprot ID   F9P7E1
Organism   Streptococcus constellatus strain TCV107     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1280336..1291124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS06445 (DEH83_06455) - 1280889..1281851 (-) 963 WP_255776432.1 asparaginase -
  DEH83_RS06450 (DEH83_06460) - 1281916..1283304 (+) 1389 WP_247927523.1 Cof-type HAD-IIB family hydrolase -
  DEH83_RS06455 (DEH83_06465) - 1283350..1283802 (-) 453 WP_048801206.1 universal stress protein -
  DEH83_RS06460 (DEH83_06470) - 1283954..1285168 (+) 1215 WP_255776433.1 pyridoxal phosphate-dependent aminotransferase -
  DEH83_RS06465 (DEH83_06475) codY 1285336..1286124 (+) 789 WP_003070508.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DEH83_RS06470 (DEH83_06480) - 1286124..1286699 (+) 576 WP_255776434.1 cysteine hydrolase family protein -
  DEH83_RS06475 (DEH83_06485) aspS 1287210..1288946 (+) 1737 WP_255776435.1 aspartate--tRNA ligase -
  DEH83_RS06480 (DEH83_06490) gatC 1289023..1289325 (+) 303 WP_255776436.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  DEH83_RS06485 (DEH83_06495) gatA 1289325..1290785 (+) 1461 WP_006270265.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  DEH83_RS06490 - 1290789..1290959 (+) 171 WP_006270305.1 hypothetical protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29721.06 Da        Isoelectric Point: 5.2508

>NTDB_id=252142 DEH83_RS06465 WP_003070508.1 1285336..1286124(+) (codY) [Streptococcus constellatus strain TCV107]
MANLLAKTRKITSILRRSDERLQEELPYNAITQQLAEIMDCNACIVNSKGRLLGYFMRYKTNNDRVEAFYQTKIFPEEYV
RTANLMYDTEANLPVNHALSIFPVETKDEFPDGLTTISPIHVSGIRLGTLIVWRNDKEFDDDDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPDVFEEIKRRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=252142 DEH83_RS06465 WP_003070508.1 1285336..1286124(+) (codY) [Streptococcus constellatus strain TCV107]
ATGGCAAACTTATTAGCAAAAACACGAAAAATTACATCTATTTTGCGTCGTTCAGATGAGCGCTTACAGGAAGAATTGCC
TTACAATGCTATTACTCAGCAGTTAGCTGAGATTATGGATTGCAATGCTTGTATTGTAAACAGCAAGGGGCGTCTTTTGG
GGTATTTTATGCGCTACAAGACGAATAATGACCGGGTGGAAGCATTTTATCAAACAAAAATCTTCCCAGAAGAGTATGTT
CGCACAGCGAATTTGATGTATGATACAGAAGCTAATCTTCCTGTCAATCATGCTTTATCTATTTTTCCAGTCGAAACCAA
AGATGAATTTCCAGATGGCTTGACGACGATTTCGCCTATTCATGTTTCAGGGATTCGCTTAGGAACTTTGATTGTTTGGC
GCAATGATAAAGAATTTGATGATGATGATTTGATTTTGGTTGAAATTGCAAGTACAGTAGTTGGTATTCAGTTACTCAAT
TTCCAACGAGAAGAAGATGAAAAAAATATTCGCCGCAGAACAGCTGTAACCATGGCTGTAAATACGCTGTCTTATTCAGA
ATTACGAGCTGTTTCAGCAATTTTGGGTGAATTAAATGGCAATGAAGGTCAATTGACAGCATCGGTCATTGCGGATCGTA
TTGGAATTACTCGCTCAGTGATTGTCAATGCTCTGCGTAAACTAGAGAGTGCAGGCATTATTGAAAGTCGTTCTTTAGGA
ATGAAAGGAACCTACCTTAAAGTCCTTATTCCCGATGTCTTTGAAGAGATTAAAAGGAGAGACTACTGA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9P7E1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

61.832

100

0.618
  codY Bacillus subtilis subsp. subtilis str. 168

50.407

93.893

0.473

Multiple sequence alignment