Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SAB_RS06000 Genome accession   NC_007622
Coordinates   1209102..1209875 (+) Length   257 a.a.
NCBI ID   WP_000055336.1    Uniprot ID   Q2YXL3
Organism   Staphylococcus aureus RF122     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1204102..1214875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAB_RS05980 (SAB1113) trmFO 1204444..1205751 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  SAB_RS05985 (SAB1114) xerC 1206170..1207066 (+) 897 WP_001015607.1 tyrosine recombinase XerC -
  SAB_RS05990 (SAB1115) hslV 1207063..1207608 (+) 546 WP_000072680.1 ATP-dependent protease subunit HslV -
  SAB_RS05995 (SAB1116) hslU 1207674..1209077 (+) 1404 WP_000379056.1 ATP-dependent protease ATPase subunit HslU -
  SAB_RS06000 (SAB1117) codY 1209102..1209875 (+) 774 WP_000055336.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SAB_RS06005 - 1209926..1210018 (+) 93 WP_031788481.1 hypothetical protein -
  SAB_RS06010 (SAB1118) rpsB 1210217..1210984 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  SAB_RS06015 - 1211018..1211131 (+) 114 WP_001789890.1 hypothetical protein -
  SAB_RS06020 (SAB1119) tsf 1211166..1212047 (+) 882 WP_000201389.1 translation elongation factor Ts -
  SAB_RS06025 (SAB1120) pyrH 1212184..1212906 (+) 723 WP_000057330.1 UMP kinase -
  SAB_RS06030 (SAB1121) frr 1212925..1213479 (+) 555 WP_001280006.1 ribosome recycling factor -
  SAB_RS06035 (SAB1122) - 1213852..1214622 (+) 771 WP_000473708.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28655.99 Da        Isoelectric Point: 5.7568

>NTDB_id=25203 SAB_RS06000 WP_000055336.1 1209102..1209875(+) (codY) [Staphylococcus aureus RF122]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADGVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=25203 SAB_RS06000 WP_000055336.1 1209102..1209875(+) (codY) [Staphylococcus aureus RF122]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCGATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
AGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATGGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTTATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YXL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428