Detailed information NTG0251978

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: CG481_RS17190
• Genome accession: NZ_CP024104
• Coordinates: 3249522..3251858 (-)
• Length: 778 a.a.
• NCBI ID: WP_041810038.1
• Uniprot ID: A0AAX2CKV1
• Organism: Bacillus cytotoxicus strain CH_23
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	3247454..3248914	3249522..3251858	flank	608

Gene organization within MGE regions

Location: 3247454..3251858

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CG481_RS17175 (CG481_017100)	-	3247454..3248914 (+)	1461	WP_048723387.1	IS1182-like element ISBcy1 family transposase	-
CG481_RS17180 (CG481_017105)	-	3249060..3249188 (-)	129	WP_012095565.1	YrzQ family protein	-
CG481_RS17185 (CG481_017110)	-	3249207..3249395 (-)	189	WP_012095566.1	hypothetical protein	-
CG481_RS17190 (CG481_017115)	recD2	3249522..3251858 (-)	2337	WP_041810038.1	ATP-dependent RecD-like DNA helicase	Machinery gene

Sequence

Protein

• Length: 778 a.a.
• Molecular weight: 87605.36 Da
• Isoelectric Point: 5.4886

>NTDB_id=251978 CG481_RS17190 WP_041810038.1 3249522..3251858(-) (recD2) [Bacillus cytotoxicus strain CH_23]
MENQHAMDLFEEERKFIKAQVLHTIFHNEENLYSVVSMKVIETNEAYDEKKVMINGHFPRMHEDEVFTLTGYFKEHPKYG
KQYQVETFKKELPQTKTGMVQYLASDLFKGIGKRTAEKIVNHLGEHAISKIMDDPAALEGVVNKQKAQEIYETIIEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHNDRVRAGCFYTLENVS
LQYGHVYMEKEQLVRETMSLLNNREGTVTEEDIVQCIEMMQGEGKIIIEEERIYLASLYYSEKGVVKSIHRLMSQKETPS
FPEAEVLLTLGKIEEQMKVQYAPLQQEAIQTALHQPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPKDYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIVDEFSMVDIWLANQLLKSLPTNMQVIIVGD
EDQLPSVGPGQVLKDLLNAGIIPTVKLTEIYRQAEGSSVVQLAHAIKNGTLPPDVTKNKQDRSFIACTGNQIVDVVKRVC
ESAKVKGFSAKDVQVLAPMYRGSAGINVLNEALQQVFNPKQEKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEII
SIFYAKENVEQQDMVVVSFDGIEVTYTKADLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEEAFRSGVNRLDDAMRQTTLGSRLQEAKGEAQMVVINGEEMDVENISPYDFM

Nucleotide

• Length: 2337 bp

>NTDB_id=251978 CG481_RS17190 WP_041810038.1 3249522..3251858(-) (recD2) [Bacillus cytotoxicus strain CH_23]
ATGGAGAATCAACATGCCATGGATTTGTTTGAGGAAGAGAGAAAGTTTATAAAAGCGCAAGTTCTTCATACTATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACAAATGAAGCATATGACGAAAAAAAAGTAATGA
TCAACGGTCATTTTCCCCGTATGCATGAAGATGAAGTATTTACATTAACAGGGTATTTTAAAGAGCATCCTAAATATGGG
AAGCAATATCAAGTTGAAACATTTAAAAAAGAATTGCCCCAAACGAAAACAGGAATGGTGCAATATTTAGCGAGCGATTT
ATTTAAAGGAATTGGGAAGCGAACAGCTGAAAAAATTGTCAATCATCTTGGAGAACACGCCATTTCTAAAATTATGGATG
ATCCGGCTGCGCTAGAAGGTGTCGTCAATAAGCAAAAAGCGCAAGAAATATATGAGACGATCATTGAGCATCAAGGGCTT
GAAAAAGTGATGAGCTTTTTAAATGGTTATGGATTTGGGACAAAGCTTTCCATTAAAATTTATCAGCAATATAAAGAAAT
GACACTAGAAGTTATTCGAAATAATCCGTACCAGTTGATTGAAGAAGTTGACGGAATTGGCTTTGGAAGAGCAGACGATA
TAGGACGTGCTCTTGGGATATCAGGAAATCATAATGATCGTGTACGAGCGGGATGTTTTTATACGTTGGAGAATGTATCG
CTTCAATATGGTCATGTTTATATGGAGAAGGAGCAGCTTGTACGTGAAACGATGTCCCTTTTAAATAACCGAGAAGGGAC
TGTGACGGAAGAAGATATTGTGCAATGCATCGAAATGATGCAAGGCGAAGGGAAAATCATTATAGAGGAAGAGCGTATTT
ATTTGGCTTCTTTATATTATTCTGAGAAAGGTGTTGTGAAGTCGATTCATCGCCTGATGAGCCAAAAAGAAACGCCGTCA
TTTCCCGAGGCAGAAGTGTTGTTAACGTTAGGTAAGATCGAAGAGCAGATGAAAGTACAGTATGCACCGCTTCAGCAAGA
GGCGATTCAAACAGCACTTCATCAACCGATGATGCTGTTAACCGGTGGCCCAGGAACAGGAAAGACAACAGTTATTAAAG
GAATTGTCGAAATGTATGCATCGCTACATGGATTATCGTTAAATCCTAAAGATTATAGCGATGATAATCCATTTCCGATT
TTATTAACAGCTCCAACAGGTCGTGCGGCAAAGCGAATGAGCGAATCAACAGGTCTTCCTGCATGTACAATTCACCGTTT
GCTTGGTTGGACGCCCGAAGGCTCGTTTCAGCGAAATGAAACAGATCCGGTGCAGGGGAAACTTCTTATTGTCGATGAAT
TTTCTATGGTCGATATTTGGCTTGCAAATCAGCTTTTGAAATCATTGCCGACAAATATGCAAGTCATTATTGTTGGCGAT
GAAGATCAATTGCCATCTGTAGGACCGGGACAAGTATTAAAAGATTTATTAAACGCCGGTATCATTCCAACGGTAAAACT
GACCGAAATTTATCGGCAAGCTGAAGGGTCATCTGTTGTTCAACTTGCTCATGCGATAAAGAATGGAACATTACCGCCAG
ATGTAACGAAAAATAAACAAGATCGTTCCTTTATTGCGTGCACGGGGAATCAAATTGTTGATGTTGTAAAACGAGTGTGT
GAAAGCGCAAAAGTAAAGGGATTTAGTGCAAAAGATGTGCAAGTGTTAGCACCTATGTATCGCGGATCGGCAGGGATTAA
TGTGTTAAATGAGGCATTGCAACAAGTCTTTAACCCGAAACAAGAAAAGAGTAAAGAAATTGCTTATGGTGATGTTGTAT
ATAGAAGAGGCGATAAGGTTCTTCAATTAGTCAATCAACCGGAAAGTCAAGTGTTTAATGGAGATATTGGCGAAATTATT
TCTATATTTTACGCGAAGGAAAATGTAGAGCAACAAGATATGGTTGTTGTTTCATTTGATGGCATTGAAGTGACATATAC
GAAGGCTGATTTGAATCAAATTACACATGCATATTGCTGCTCCATTCATAAGTCGCAAGGGAGTGAATTTCCGATTGTAA
TTATGCCGATTGTAAAAAGTTATAACCGCATGTTGCGTCGGAATTTAATTTATACGGGTATTACAAGAAGTAAAAAGTTT
TTGATTATCTGCGGAGAAGAAGAAGCTTTTCGATCTGGAGTGAACCGTCTCGATGATGCCATGCGGCAAACAACTTTAGG
AAGTCGTTTGCAAGAGGCAAAAGGCGAAGCACAGATGGTTGTTATTAATGGAGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTTATGTAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (156-247)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-659)

• AAA domain (AAA_30) (341-548)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (676-724)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	57.901	100	0.589