Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | BXP06_RS07585 | Genome accession | NZ_CP024078 |
| Coordinates | 1554479..1554592 (-) | Length | 37 a.a. |
| NCBI ID | WP_001217873.1 | Uniprot ID | G2MCV1 |
| Organism | Helicobacter pylori strain 7.13_R3b | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1549479..1559592
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BXP06_RS07565 (BXP06_07560) | - | 1550145..1551557 (-) | 1413 | WP_001861341.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| BXP06_RS07570 (BXP06_07565) | comB10 | 1551627..1552763 (-) | 1137 | WP_001045869.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| BXP06_RS07575 (BXP06_07570) | comB9 | 1552756..1553739 (-) | 984 | WP_001861340.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| BXP06_RS07580 (BXP06_07575) | comB8 | 1553739..1554482 (-) | 744 | WP_000660520.1 | type IV secretion system protein | Machinery gene |
| BXP06_RS07585 (BXP06_07580) | comB7 | 1554479..1554592 (-) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| BXP06_RS07590 (BXP06_07585) | comB6 | 1554608..1555663 (-) | 1056 | WP_000786677.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| BXP06_RS07595 (BXP06_07590) | - | 1555671..1556666 (-) | 996 | WP_000468428.1 | PDZ domain-containing protein | - |
| BXP06_RS07600 (BXP06_07595) | - | 1556666..1556968 (-) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| BXP06_RS07605 (BXP06_07600) | panD | 1556971..1557324 (-) | 354 | WP_000142236.1 | aspartate 1-decarboxylase | - |
| BXP06_RS07610 (BXP06_07605) | - | 1557314..1559539 (-) | 2226 | WP_001051506.1 | AAA family ATPase | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4325.25 Da Isoelectric Point: 9.3572
>NTDB_id=251683 BXP06_RS07585 WP_001217873.1 1554479..1554592(-) (comB7) [Helicobacter pylori strain 7.13_R3b]
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=251683 BXP06_RS07585 WP_001217873.1 1554479..1554592(-) (comB7) [Helicobacter pylori strain 7.13_R3b]
ATGAGAATTTTTTTTGTTATCATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAATCTCGCATGA
ATGAGAATTTTTTTTGTTATCATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAATCTCGCATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
100 |
100 |
1 |