Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | BXP04_RS07685 | Genome accession | NZ_CP024076 |
| Coordinates | 1577791..1578054 (-) | Length | 87 a.a. |
| NCBI ID | WP_000584958.1 | Uniprot ID | D7FG60 |
| Organism | Helicobacter pylori strain 7.13_R2c | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1572791..1583054
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BXP04_RS07670 (BXP04_07660) | - | 1573773..1575113 (-) | 1341 | WP_001879388.1 | COG3014 family protein | - |
| BXP04_RS07680 (BXP04_07670) | comB4 | 1575426..1577789 (-) | 2364 | WP_000890512.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| BXP04_RS07685 (BXP04_07675) | comB3 | 1577791..1578054 (-) | 264 | WP_000584958.1 | hypothetical protein | Machinery gene |
| BXP04_RS07690 (BXP04_07680) | comB2 | 1578054..1578335 (-) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| BXP04_RS07695 (BXP04_07685) | - | 1578480..1579307 (-) | 828 | WP_001154960.1 | DUF5718 family protein | - |
| BXP04_RS07700 (BXP04_07690) | - | 1579397..1580449 (-) | 1053 | WP_000721172.1 | MnmA/TRMU family protein | - |
| BXP04_RS07705 (BXP04_07695) | dnaG | 1580446..1582125 (-) | 1680 | WP_000601628.1 | DNA primase | - |
| BXP04_RS07715 (BXP04_07705) | groES | 1582411..1582767 (+) | 357 | WP_000671934.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10066.12 Da Isoelectric Point: 9.7585
>NTDB_id=251640 BXP04_RS07685 WP_000584958.1 1577791..1578054(-) (comB3) [Helicobacter pylori strain 7.13_R2c]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKYYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKYYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=251640 BXP04_RS07685 WP_000584958.1 1577791..1578054(-) (comB3) [Helicobacter pylori strain 7.13_R2c]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGTTGGAATTTTTTGATGAAGACATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATATTATAGAGCGTAG
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGTTGGAATTTTTTGATGAAGACATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATATTATAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
98.851 |
100 |
0.989 |