Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | BXP02_RS07700 | Genome accession | NZ_CP024074 |
| Coordinates | 1577734..1577997 (-) | Length | 87 a.a. |
| NCBI ID | WP_000584958.1 | Uniprot ID | D7FG60 |
| Organism | Helicobacter pylori strain 7.13_R2a | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1572734..1582997
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BXP02_RS07685 (BXP02_07680) | - | 1573716..1575056 (-) | 1341 | WP_001879388.1 | COG3014 family protein | - |
| BXP02_RS07695 (BXP02_07690) | comB4 | 1575369..1577732 (-) | 2364 | WP_000890512.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| BXP02_RS07700 (BXP02_07695) | comB3 | 1577734..1577997 (-) | 264 | WP_000584958.1 | hypothetical protein | Machinery gene |
| BXP02_RS07705 (BXP02_07700) | comB2 | 1577997..1578278 (-) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| BXP02_RS07710 (BXP02_07705) | - | 1578423..1579250 (-) | 828 | WP_001154960.1 | DUF5718 family protein | - |
| BXP02_RS07715 (BXP02_07710) | - | 1579340..1580392 (-) | 1053 | WP_000721172.1 | MnmA/TRMU family protein | - |
| BXP02_RS07720 (BXP02_07715) | dnaG | 1580389..1582068 (-) | 1680 | WP_000601628.1 | DNA primase | - |
| BXP02_RS07730 (BXP02_07725) | groES | 1582354..1582710 (+) | 357 | WP_000671934.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10066.12 Da Isoelectric Point: 9.7585
>NTDB_id=251594 BXP02_RS07700 WP_000584958.1 1577734..1577997(-) (comB3) [Helicobacter pylori strain 7.13_R2a]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKYYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKYYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=251594 BXP02_RS07700 WP_000584958.1 1577734..1577997(-) (comB3) [Helicobacter pylori strain 7.13_R2a]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGTTGGAATTTTTTGATGAAGACATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATATTATAGAGCGTAG
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGTTGGAATTTTTTGATGAAGACATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATATTATAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
98.851 |
100 |
0.989 |