Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   SYNPCC7942_RS03135 Genome accession   NC_007604
Coordinates   599815..602205 (+) Length   796 a.a.
NCBI ID   WP_011377646.1    Uniprot ID   Q31QM6
Organism   Synechococcus elongatus PCC 7942 = FACHB-805     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 594815..607205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNPCC7942_RS03115 (Synpcc7942_0607) - 595381..595707 (+) 327 WP_011243229.1 hypothetical protein -
  SYNPCC7942_RS03120 (Synpcc7942_0608) - 595756..596298 (+) 543 WP_011377643.1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase -
  SYNPCC7942_RS03125 (Synpcc7942_0609) - 596382..597872 (+) 1491 WP_011377644.1 NADH-quinone oxidoreductase subunit M -
  SYNPCC7942_RS03130 (Synpcc7942_0610) - 597977..599776 (+) 1800 WP_011377645.1 mechanosensitive ion channel family protein -
  SYNPCC7942_RS03135 (Synpcc7942_0611) mutS/mutS2 599815..602205 (+) 2391 WP_011377646.1 endonuclease MutS2 Machinery gene
  SYNPCC7942_RS03140 (Synpcc7942_0612) - 602209..603369 (-) 1161 WP_011377647.1 citrate synthase -
  SYNPCC7942_RS03145 (Synpcc7942_0613) sixA 603504..603992 (-) 489 WP_011243223.1 phosphohistidine phosphatase SixA -
  SYNPCC7942_RS03150 (Synpcc7942_0614) - 603996..605675 (-) 1680 WP_011243222.1 DUF3352 domain-containing protein -
  SYNPCC7942_RS03155 (Synpcc7942_0615) - 605836..606180 (+) 345 WP_011243221.1 rhodanese-like domain-containing protein -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 87174.38 Da        Isoelectric Point: 6.4599

>NTDB_id=25129 SYNPCC7942_RS03135 WP_011377646.1 599815..602205(+) (mutS/mutS2) [Synechococcus elongatus PCC 7942 = FACHB-805]
MAPLLPVEQEALELLEWPLLCQQVASFAATALARRAARSLPLASSQAESEYLLSQTAEAQALELTLPQGLPFAGVFDIGE
ALARVERQAVLSGEELLQIASTLAAMRQLRRLIDAAEAAPTLQAIVADLRTYPELEQQIHFCIEDSGEVADRASDALLGI
RQQQRQVRSQILDRLNRLLRNQSNLFQELVISRRSDRYVLPVKAGQKEAVPGIVHDSSSSGSTLYIEPRGVIELNNQLRQ
LQRREEVECEAVRRRLSEAIASVSGDLETLLAIATTLDLAVARARYGLHLEANRPRFTASSESICLRQLRHPLLLWQQRQ
DPDRSVVPVSFQLQPSLKVVAITGPNTGGKTVTLKSLGLAGLMARAGLFVPAREPVDLPWFERILTDIGDEQSLQQSLST
FSGHIRRIGRILEALPVAGASLVLLDEVGAGTDPSEGSALAIALLRYLADHATLTIATTHYGELKALKYQDDRFENASVE
FDDRTLSPTYRLLWGIPGRSNALIIAERLGLSPAVVAEARSQLEGGRDRDVDAVIAGLEAQRRDQEEKAAAAAQLLQQTE
KLHAELQAKTAELREREQSLRQQQEVAIQSEIEQARQRVAKVVRRLQQGPKATKAERARQASETLKSLSQPAVTVVAPPP
GFQPQLGDRLRIPRLGKVGEVLAIAPDRQELTVRCGILKLTVSYGDVESLQGEKVELPPPPPKSTTPPPPPKDAPAIRTD
RNTFDVRGSRVSEAEVVLEDALRQAIGPIWIIHGHGTGKLRQGVQQFLREHPLVAKFEAADQADGGNGVTIAYPKT

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=25129 SYNPCC7942_RS03135 WP_011377646.1 599815..602205(+) (mutS/mutS2) [Synechococcus elongatus PCC 7942 = FACHB-805]
GTGGCTCCTTTGCTCCCCGTTGAACAGGAAGCGCTCGAATTGCTGGAATGGCCGCTGCTCTGCCAGCAGGTGGCTAGCTT
TGCAGCCACGGCCTTGGCCCGACGAGCAGCGCGATCGCTGCCGTTGGCCAGCAGCCAAGCGGAGAGTGAATACTTGTTAT
CCCAGACTGCAGAAGCCCAAGCGTTGGAGTTGACACTACCCCAAGGTCTGCCCTTTGCGGGGGTCTTTGATATTGGCGAA
GCCCTCGCCCGCGTGGAACGACAGGCGGTTCTCAGCGGCGAGGAGCTGCTGCAAATCGCCTCAACCCTCGCGGCGATGCG
GCAATTGCGCCGACTGATCGATGCGGCAGAAGCGGCCCCCACCCTGCAAGCGATCGTTGCTGATCTACGCACCTATCCCG
AGCTGGAGCAGCAGATTCATTTCTGCATTGAGGACTCGGGGGAAGTTGCCGATCGCGCCAGCGACGCACTGCTAGGGATT
CGCCAGCAGCAGCGCCAAGTGCGCAGCCAAATTCTCGATCGCCTCAATCGTCTGCTGCGCAACCAGTCCAATCTCTTTCA
GGAGCTGGTGATCAGCCGCCGCAGCGATCGCTATGTGCTGCCGGTGAAGGCGGGGCAGAAAGAGGCAGTGCCTGGCATCG
TCCACGACAGCTCTAGCAGTGGCTCCACGCTCTACATCGAGCCGCGCGGTGTGATTGAACTGAATAACCAACTACGTCAG
CTCCAACGACGAGAAGAAGTGGAGTGTGAGGCAGTGCGGCGGCGCTTGAGTGAGGCGATCGCATCTGTCAGTGGGGATCT
CGAAACGCTGCTAGCGATCGCGACAACATTGGATCTGGCGGTGGCGCGGGCCCGCTACGGCCTGCATCTCGAAGCGAATC
GACCGCGCTTTACGGCTAGCAGCGAGTCGATTTGTCTGCGTCAGCTGCGCCATCCCCTGCTGCTCTGGCAACAGCGCCAA
GATCCCGATCGCTCAGTGGTGCCGGTCAGTTTCCAGTTGCAGCCCTCGCTGAAGGTGGTGGCGATCACGGGGCCGAATAC
CGGCGGTAAAACCGTGACGCTCAAAAGCCTTGGGCTGGCGGGCTTGATGGCGCGCGCCGGTCTGTTTGTCCCCGCCCGAG
AGCCGGTGGATCTGCCTTGGTTTGAGCGCATCCTCACCGATATTGGCGATGAGCAGTCCCTGCAGCAAAGCCTTTCAACC
TTTTCGGGTCACATTCGTCGCATTGGCCGAATTCTAGAAGCGTTGCCGGTCGCGGGAGCTAGCCTCGTCCTGCTCGATGA
AGTGGGAGCGGGCACCGATCCCTCAGAGGGCAGTGCGCTGGCGATCGCGCTGTTGCGCTACTTGGCCGATCACGCGACTC
TGACGATCGCTACGACGCATTACGGCGAATTGAAGGCCCTGAAATATCAGGACGATCGCTTCGAAAATGCCTCGGTAGAA
TTTGACGATCGCACCCTCTCTCCGACCTATCGCTTGCTCTGGGGCATCCCCGGGCGATCGAATGCGCTGATCATTGCCGA
GCGACTGGGACTATCACCAGCAGTCGTAGCTGAGGCGCGATCGCAACTGGAAGGGGGCCGCGATCGCGATGTAGATGCCG
TGATCGCAGGGCTGGAAGCGCAACGGCGCGATCAAGAAGAGAAGGCTGCCGCCGCTGCTCAGTTGTTGCAACAGACTGAA
AAGCTACACGCCGAACTACAAGCCAAGACAGCCGAATTGCGGGAGCGAGAGCAAAGCTTGCGCCAGCAGCAAGAAGTGGC
GATCCAGTCGGAAATTGAGCAGGCACGACAGCGGGTTGCCAAGGTGGTGCGGCGTCTGCAGCAGGGACCGAAAGCGACAA
AAGCAGAACGAGCACGGCAGGCCAGTGAAACCCTCAAGTCGCTGTCACAACCAGCCGTGACGGTCGTTGCCCCACCGCCT
GGTTTCCAGCCGCAGTTGGGCGATCGCCTGCGGATTCCGCGCTTGGGTAAGGTCGGCGAAGTCCTTGCGATCGCGCCGGA
TCGTCAGGAGTTAACGGTGCGTTGCGGCATCCTCAAGCTGACGGTCAGCTACGGCGATGTGGAGTCATTGCAGGGCGAAA
AGGTAGAACTGCCCCCGCCCCCGCCTAAGTCAACAACTCCGCCGCCCCCGCCCAAAGATGCGCCGGCGATTCGCACCGAT
CGCAATACCTTCGATGTACGCGGCAGTCGTGTTTCGGAAGCCGAAGTGGTGCTGGAAGATGCGCTGCGTCAAGCGATTGG
ACCGATCTGGATCATCCATGGCCATGGCACTGGCAAACTGCGGCAAGGCGTGCAGCAGTTCCTACGCGAGCATCCACTTG
TCGCGAAGTTTGAAGCTGCCGATCAAGCTGACGGGGGCAACGGCGTTACTATCGCCTATCCCAAGACCTAA

Domains

Predicted by InterProScan.

MutS2 and Smr-associated SH3 domain (MSSS)

(647-686)

MutS domain V (MutS_V)

(342-523)

Smr domain (Smr)

(725-791)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31QM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

36.94

100

0.373