Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CSC26_RS09265 Genome accession   NZ_CP029097
Coordinates   1461613..1462038 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain AR439     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1456613..1467038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC26_RS09245 (CSC26_1353) ileS 1456770..1459601 (+) 2832 WP_003102617.1 isoleucine--tRNA ligase -
  CSC26_RS09250 (CSC26_1354) lspA 1459594..1460103 (+) 510 WP_003094728.1 signal peptidase II -
  CSC26_RS09255 (CSC26_1355) fkpB 1460096..1460536 (+) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  CSC26_RS09260 (CSC26_1356) ispH 1460622..1461566 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  CSC26_RS09265 (CSC26_1357) comF 1461613..1462038 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  CSC26_RS09270 (CSC26_1358) pilY2 1462035..1462382 (-) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  CSC26_RS09275 (CSC26_1359) pilY1 1462384..1465875 (-) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  CSC26_RS09280 (CSC26_1360) pilX 1465887..1466474 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=251269 CSC26_RS09265 WP_003094721.1 1461613..1462038(-) (comF) [Pseudomonas aeruginosa strain AR439]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=251269 CSC26_RS09265 WP_003094721.1 1461613..1462038(-) (comF) [Pseudomonas aeruginosa strain AR439]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAATCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383