Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | CRN76_RS13725 | Genome accession | NZ_CP023968 |
| Coordinates | 3032972..3033625 (+) | Length | 217 a.a. |
| NCBI ID | WP_027374733.1 | Uniprot ID | - |
| Organism | Chryseobacterium indologenes strain FDAARGOS_379 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3027972..3038625
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CRN76_RS13710 (CRN76_13710) | aceA | 3028312..3029592 (-) | 1281 | WP_061085148.1 | isocitrate lyase | - |
| CRN76_RS13715 (CRN76_13715) | aceB | 3029705..3031279 (-) | 1575 | WP_098971882.1 | malate synthase A | - |
| CRN76_RS13720 (CRN76_13720) | - | 3031406..3032884 (+) | 1479 | WP_061085150.1 | helix-turn-helix domain-containing protein | - |
| CRN76_RS13725 (CRN76_13725) | comF | 3032972..3033625 (+) | 654 | WP_027374733.1 | ComF family protein | Machinery gene |
| CRN76_RS13730 (CRN76_13730) | - | 3033768..3034454 (+) | 687 | WP_098971884.1 | alpha/beta fold hydrolase | - |
| CRN76_RS13735 (CRN76_13735) | upp | 3034456..3035106 (-) | 651 | WP_098971885.1 | uracil phosphoribosyltransferase | - |
| CRN76_RS13740 (CRN76_13740) | der | 3035261..3036571 (-) | 1311 | WP_027374736.1 | ribosome biogenesis GTPase Der | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25454.48 Da Isoelectric Point: 8.0805
>NTDB_id=250987 CRN76_RS13725 WP_027374733.1 3032972..3033625(+) (comF) [Chryseobacterium indologenes strain FDAARGOS_379]
MILDLLFPNRCIHCNRMIDAELLVCDLCFDQIHFTHYNYFENNPIREKCSLLFPVENTFALIQFEKENLSRKLIHELKYK
GREKVGKILAEWTTEVVDFKNRKPDLLVSVPLHPKKLRERGYNQLHLFTETLSEFYRIPFDHQLIKRNHYSKAQALKDKK
HRLETVNTFSLTQPVSGQHILLIDDVFTTGNTISSIAWEILNSGNNRVSVLVMAIDV
MILDLLFPNRCIHCNRMIDAELLVCDLCFDQIHFTHYNYFENNPIREKCSLLFPVENTFALIQFEKENLSRKLIHELKYK
GREKVGKILAEWTTEVVDFKNRKPDLLVSVPLHPKKLRERGYNQLHLFTETLSEFYRIPFDHQLIKRNHYSKAQALKDKK
HRLETVNTFSLTQPVSGQHILLIDDVFTTGNTISSIAWEILNSGNNRVSVLVMAIDV
Nucleotide
Download Length: 654 bp
>NTDB_id=250987 CRN76_RS13725 WP_027374733.1 3032972..3033625(+) (comF) [Chryseobacterium indologenes strain FDAARGOS_379]
ATGATACTTGACCTATTATTTCCTAACCGCTGTATTCATTGCAACAGAATGATTGATGCTGAGTTATTGGTATGTGATTT
ATGTTTTGATCAGATTCATTTTACGCATTACAATTATTTTGAAAACAATCCTATCCGCGAAAAATGCAGCCTGCTCTTTC
CTGTTGAGAATACCTTTGCTCTGATACAGTTTGAAAAAGAAAACCTGAGCCGGAAGCTTATCCATGAGCTCAAATATAAA
GGAAGGGAGAAAGTCGGAAAAATTCTTGCAGAATGGACCACGGAAGTAGTGGATTTTAAAAACCGGAAACCCGATCTCCT
GGTAAGCGTTCCTCTTCATCCGAAAAAATTAAGAGAAAGGGGATATAATCAGCTTCACCTTTTCACGGAGACATTGTCGG
AATTTTACAGGATTCCGTTTGATCATCAGCTTATCAAAAGAAATCACTATTCAAAAGCCCAGGCATTAAAAGATAAGAAA
CACAGGCTGGAAACCGTTAACACCTTTTCTTTAACCCAACCTGTTAGCGGGCAACATATTTTACTGATCGATGATGTCTT
TACTACCGGCAATACCATCTCTTCTATAGCCTGGGAGATTTTAAATTCCGGCAATAATAGGGTGAGTGTATTGGTAATGG
CTATAGATGTTTAA
ATGATACTTGACCTATTATTTCCTAACCGCTGTATTCATTGCAACAGAATGATTGATGCTGAGTTATTGGTATGTGATTT
ATGTTTTGATCAGATTCATTTTACGCATTACAATTATTTTGAAAACAATCCTATCCGCGAAAAATGCAGCCTGCTCTTTC
CTGTTGAGAATACCTTTGCTCTGATACAGTTTGAAAAAGAAAACCTGAGCCGGAAGCTTATCCATGAGCTCAAATATAAA
GGAAGGGAGAAAGTCGGAAAAATTCTTGCAGAATGGACCACGGAAGTAGTGGATTTTAAAAACCGGAAACCCGATCTCCT
GGTAAGCGTTCCTCTTCATCCGAAAAAATTAAGAGAAAGGGGATATAATCAGCTTCACCTTTTCACGGAGACATTGTCGG
AATTTTACAGGATTCCGTTTGATCATCAGCTTATCAAAAGAAATCACTATTCAAAAGCCCAGGCATTAAAAGATAAGAAA
CACAGGCTGGAAACCGTTAACACCTTTTCTTTAACCCAACCTGTTAGCGGGCAACATATTTTACTGATCGATGATGTCTT
TACTACCGGCAATACCATCTCTTCTATAGCCTGGGAGATTTTAAATTCCGGCAATAATAGGGTGAGTGTATTGGTAATGG
CTATAGATGTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
51.389 |
99.539 |
0.512 |