Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   CRM97_RS09405 Genome accession   NZ_CP023866
Coordinates   1770536..1771051 (-) Length   171 a.a.
NCBI ID   WP_002799196.1    Uniprot ID   Q0P8R6
Organism   Campylobacter jejuni strain FDAARGOS_421     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1765536..1776051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRM97_RS09390 (CRM97_09390) - 1765648..1767465 (-) 1818 WP_011049960.1 motility associated factor glycosyltransferase family protein -
  CRM97_RS09395 (CRM97_09395) - 1767462..1769285 (-) 1824 WP_011049961.1 motility associated factor glycosyltransferase family protein -
  CRM97_RS09400 (CRM97_09400) - 1769295..1770536 (-) 1242 WP_002873625.1 DUF2920 family protein -
  CRM97_RS09405 (CRM97_09405) ctsG 1770536..1771051 (-) 516 WP_002799196.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CRM97_RS09410 (CRM97_09410) tsaD 1771052..1772059 (-) 1008 WP_002864246.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  CRM97_RS09415 (CRM97_09415) - 1772056..1773450 (-) 1395 WP_011049962.1 M99 family carboxypeptidase catalytic domain-containing protein -
  CRM97_RS09420 (CRM97_09420) dxr 1773452..1774522 (-) 1071 WP_002867315.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  CRM97_RS09425 (CRM97_09425) cdsA 1774519..1775244 (-) 726 WP_002867314.1 phosphatidate cytidylyltransferase -
  CRM97_RS09430 (CRM97_09430) - 1775253..1775591 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=250725 CRM97_RS09405 WP_002799196.1 1770536..1771051(-) (ctsG) [Campylobacter jejuni strain FDAARGOS_421]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=250725 CRM97_RS09405 WP_002799196.1 1770536..1771051(-) (ctsG) [Campylobacter jejuni strain FDAARGOS_421]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942

Multiple sequence alignment