Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   BAALB65_RS08055 Genome accession   NZ_CP029069
Coordinates   1553620..1554069 (+) Length   149 a.a.
NCBI ID   WP_003154472.1    Uniprot ID   A7Z4C2
Organism   Bacillus amyloliquefaciens strain ALB65     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1548620..1559069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAALB65_RS08015 (BAALB65_08015) ctaE 1548751..1549374 (+) 624 WP_003154482.1 cytochrome c oxidase subunit III -
  BAALB65_RS08020 (BAALB65_08020) ctaF 1549377..1549709 (+) 333 WP_007409686.1 cytochrome c oxidase subunit IVB -
  BAALB65_RS08025 (BAALB65_08025) ctaG 1549734..1550618 (+) 885 WP_017417722.1 cytochrome c oxidase assembly factor CtaG -
  BAALB65_RS08030 (BAALB65_08030) - 1550652..1551011 (-) 360 WP_007409688.1 YugN family protein -
  BAALB65_RS08035 (BAALB65_08035) - 1551152..1551595 (+) 444 WP_014417702.1 CBS domain-containing protein -
  BAALB65_RS08040 (BAALB65_08040) - 1551680..1552720 (+) 1041 WP_014417703.1 CAP domain-containing protein -
  BAALB65_RS08045 (BAALB65_08045) - 1552884..1553294 (+) 411 WP_045207344.1 YlbD family protein -
  BAALB65_RS08050 (BAALB65_08050) - 1553310..1553549 (+) 240 WP_003154475.1 YlbE-like family protein -
  BAALB65_RS08055 (BAALB65_08055) ylbF 1553620..1554069 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  BAALB65_RS08060 (BAALB65_08060) - 1554128..1554400 (+) 273 WP_003154470.1 YlbG family protein -
  BAALB65_RS08070 (BAALB65_08070) rsmD 1554699..1555253 (+) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  BAALB65_RS08075 (BAALB65_08075) coaD 1555258..1555740 (+) 483 WP_025649487.1 pantetheine-phosphate adenylyltransferase -
  BAALB65_RS08080 (BAALB65_08080) ylbJ 1555759..1556985 (-) 1227 WP_021493722.1 sporulation integral membrane protein YlbJ -
  BAALB65_RS08085 (BAALB65_08085) - 1557165..1557944 (+) 780 WP_014304961.1 patatin family protein -
  BAALB65_RS08090 (BAALB65_08090) sepM 1557950..1558972 (+) 1023 WP_012117493.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16777.86 Da        Isoelectric Point: 4.8089

>NTDB_id=250077 BAALB65_RS08055 WP_003154472.1 1553620..1554069(+) (ylbF) [Bacillus amyloliquefaciens strain ALB65]
MYATIESVKLQSEAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=250077 BAALB65_RS08055 WP_003154472.1 1553620..1554069(+) (ylbF) [Bacillus amyloliquefaciens strain ALB65]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAACTGGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTTCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGGTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.919

100

0.879