Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DDG67_RS06405 Genome accession   NZ_CP029031
Coordinates   1259651..1260424 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain CIT     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1254651..1265424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDG67_RS06385 trmFO 1254995..1256302 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  DDG67_RS06390 xerC 1256719..1257615 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  DDG67_RS06395 hslV 1257612..1258157 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  DDG67_RS06400 hslU 1258223..1259626 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  DDG67_RS06405 codY 1259651..1260424 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DDG67_RS06410 - 1260475..1260567 (+) 93 WP_001790530.1 hypothetical protein -
  DDG67_RS06415 rpsB 1260766..1261533 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  DDG67_RS06420 - 1261567..1261680 (+) 114 WP_001789890.1 hypothetical protein -
  DDG67_RS06425 tsf 1261715..1262596 (+) 882 WP_000201387.1 translation elongation factor Ts -
  DDG67_RS06430 pyrH 1262733..1263455 (+) 723 WP_000057330.1 UMP kinase -
  DDG67_RS06435 frr 1263474..1264028 (+) 555 WP_001280006.1 ribosome recycling factor -
  DDG67_RS06440 - 1264401..1265171 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=249701 DDG67_RS06405 WP_000055337.1 1259651..1260424(+) (codY) [Staphylococcus aureus strain CIT]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=249701 DDG67_RS06405 WP_000055337.1 1259651..1260424(+) (codY) [Staphylococcus aureus strain CIT]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428