Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CQJ38_RS08255 Genome accession   NZ_CP023748
Coordinates   1609486..1610265 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain LABIM40     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1604486..1615265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQJ38_RS08235 (CQJ38_08235) trmFO 1605173..1606480 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CQJ38_RS08240 (CQJ38_08240) xerC 1606550..1607467 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  CQJ38_RS08245 (CQJ38_08245) hslV 1607483..1608028 (+) 546 WP_063095268.1 ATP-dependent protease subunit HslV -
  CQJ38_RS08250 (CQJ38_08250) hslU 1608045..1609448 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  CQJ38_RS08255 (CQJ38_08255) codY 1609486..1610265 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CQJ38_RS08260 (CQJ38_08260) flgB 1610619..1611008 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  CQJ38_RS08265 (CQJ38_08265) flgC 1611008..1611460 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  CQJ38_RS08270 (CQJ38_08270) fliE 1611471..1611791 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  CQJ38_RS08275 (CQJ38_08275) fliF 1611834..1613444 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  CQJ38_RS08280 (CQJ38_08280) fliG 1613457..1614473 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  CQJ38_RS08285 (CQJ38_08285) fliH 1614466..1615221 (+) 756 WP_015239852.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=249684 CQJ38_RS08255 WP_003154263.1 1609486..1610265(+) (codY) [Bacillus velezensis strain LABIM40]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=249684 CQJ38_RS08255 WP_003154263.1 1609486..1610265(+) (codY) [Bacillus velezensis strain LABIM40]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGTATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCACGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGAACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment