Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   DBX28_RS28045 Genome accession   NZ_CP028959
Coordinates   5893387..5893911 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain IMP66     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5888387..5898911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBX28_RS28030 (DBX28_27955) aroB 5889503..5890609 (-) 1107 WP_147719737.1 3-dehydroquinate synthase -
  DBX28_RS28035 (DBX28_27960) aroK 5890659..5891177 (-) 519 WP_003095833.1 shikimate kinase AroK -
  DBX28_RS28040 (DBX28_27965) pilQ 5891189..5893333 (-) 2145 WP_024929062.1 type 4a pilus secretin PilQ Machinery gene
  DBX28_RS28045 (DBX28_27970) comL/pilP 5893387..5893911 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  DBX28_RS28050 (DBX28_27975) pilO 5893908..5894531 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  DBX28_RS28055 (DBX28_27980) pilN 5894528..5895124 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  DBX28_RS28060 (DBX28_27985) pilM 5895124..5896188 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  DBX28_RS28065 (DBX28_27990) - 5896373..5898844 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=249504 DBX28_RS28045 WP_003095836.1 5893387..5893911(-) (comL/pilP) [Pseudomonas aeruginosa strain IMP66]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=249504 DBX28_RS28045 WP_003095836.1 5893387..5893911(-) (comL/pilP) [Pseudomonas aeruginosa strain IMP66]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362