Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   DBX28_RS25375 Genome accession   NZ_CP028959
Coordinates   5308629..5309054 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain IMP66     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5303629..5314054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBX28_RS25360 (DBX28_25290) pilX 5304193..5304780 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  DBX28_RS25365 (DBX28_25295) pilY1 5304792..5308283 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  DBX28_RS25370 (DBX28_25300) pilY2 5308285..5308632 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  DBX28_RS25375 (DBX28_25305) comF 5308629..5309054 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  DBX28_RS25380 (DBX28_25310) ispH 5309101..5310045 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DBX28_RS25385 (DBX28_25315) fkpB 5310131..5310571 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  DBX28_RS25390 (DBX28_25320) lspA 5310564..5311073 (-) 510 WP_003102615.1 signal peptidase II -
  DBX28_RS25395 (DBX28_25325) ileS 5311066..5313897 (-) 2832 WP_034020463.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=249498 DBX28_RS25375 WP_003094721.1 5308629..5309054(+) (comF) [Pseudomonas aeruginosa strain IMP66]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=249498 DBX28_RS25375 WP_003094721.1 5308629..5309054(+) (comF) [Pseudomonas aeruginosa strain IMP66]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383