Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   CPY53_RS01165 Genome accession   NZ_CP023711
Coordinates   318741..320510 (+) Length   589 a.a.
NCBI ID   WP_242210924.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain C12     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 313741..325510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPY53_RS01150 (CPY53_01165) - 314751..315497 (-) 747 WP_117289856.1 LysR family transcriptional regulator -
  CPY53_RS01155 (CPY53_01175) - 316041..317714 (+) 1674 WP_019687270.1 RICIN domain-containing protein -
  CPY53_RS25720 (CPY53_01180) - 317881..318096 (+) 216 Protein_225 nitronate monooxygenase -
  CPY53_RS01160 (CPY53_01185) - 318254..318661 (+) 408 WP_019687272.1 MarR family winged helix-turn-helix transcriptional regulator -
  CPY53_RS01165 (CPY53_01190) rcrP 318741..320510 (+) 1770 WP_242210924.1 ABC transporter ATP-binding protein Regulator
  CPY53_RS01170 (CPY53_01195) rcrQ 320497..322347 (+) 1851 WP_242210925.1 ABC transporter ATP-binding protein Regulator
  CPY53_RS01175 (CPY53_01200) - 322555..323322 (+) 768 WP_016818807.1 IclR family transcriptional regulator -
  CPY53_RS01180 (CPY53_01205) - 323509..324198 (+) 690 WP_242210926.1 type 1 glutamine amidotransferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65089.43 Da        Isoelectric Point: 7.3924

>NTDB_id=249455 CPY53_RS01165 WP_242210924.1 318741..320510(+) (rcrP) [Paenibacillus polymyxa strain C12]
MLKIFKYLKKNEWMFVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTAGTPMSELLIPGIYMLLCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKALSFSMEEMNSFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIAKIADKNWQWTAS
TGVAVAVLILMLSVIVIFALPSFQKIQRLTDNLNRVTREHLTGLRVVRAYNADQYQEEKFGQANTELMNTNLFANRLMTM
VGPGMTFIMSGLSVSIYWIGAYLINGTAVPDRISLFSNMVVFSSYAVQVVMAFMMVSMIFFLMPRASISAKRIMEVLNTE
SRIIDGHETAGEEGVMGQVEFRNVSFKYPDAEEPVLRNISFTAKQGETVAFIGATGSGKTSVINLISRFYDVTEGEVLVD
GVNVRNYKQQTLHNKIGYVPQRAVLFSGTVASNVSYGDNGRAEASEKLVKTAVGIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRILRSALKQETGHATTLIVAQRIGTIKDADRIIVLDQGEIVGNGT
HEELMANCSTYQEIAYSQLSKEELVHGQE

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=249455 CPY53_RS01165 WP_242210924.1 318741..320510(+) (rcrP) [Paenibacillus polymyxa strain C12]
ATGCTGAAGATATTCAAATATCTCAAGAAAAATGAATGGATGTTCGTGCTTTGCAGCTTGGCCTTCATCGTTGTGCAGGT
GTGGCTGGATTTGAAGTTGCCTGATTATATGGCCGAAATTACAACCAAGCTGCAAACTGCAGGAACGCCGATGTCGGAAC
TGCTGATTCCTGGTATTTATATGCTGTTATGTGCTGTCGGGAGTATGATTGCATCTATTATTGTCGGCTATTTTGCGGCA
AAGGTCGCGGCAGGGCTGGCCATGCGCCTGCGTGCGATGGTCTTTGACAAGGCCTTATCTTTTTCGATGGAAGAGATGAA
CAGCTTTTCAACAGCCAGCCTTATCACCCGTTCCACGAACGATGTTACCCAAATTCAAACGGTGGTTGCGCTGGGGTTGC
AGGTGATCATCAAGGCGCCGATTCTGGCCGTGTGGGCCATTGCAAAGATCGCAGATAAAAACTGGCAGTGGACCGCCTCT
ACAGGAGTGGCTGTGGCTGTCCTGATCCTGATGCTGAGTGTCATTGTTATTTTTGCTCTCCCCAGTTTCCAAAAAATCCA
ACGTCTCACTGATAATCTGAACAGGGTAACACGTGAGCATCTGACGGGGCTTCGCGTAGTGCGTGCTTATAATGCAGATC
AGTATCAGGAGGAGAAGTTTGGGCAGGCCAATACCGAATTGATGAATACAAACCTGTTTGCGAACCGGTTAATGACAATG
GTTGGTCCGGGCATGACCTTTATTATGTCGGGTCTGAGTGTTTCGATTTATTGGATTGGCGCTTACCTGATTAACGGAAC
GGCCGTGCCGGACCGCATTTCGCTATTCTCTAATATGGTCGTATTCTCATCTTATGCGGTGCAGGTGGTCATGGCCTTTA
TGATGGTAAGTATGATATTCTTCCTGATGCCTCGAGCTTCGATTTCTGCCAAACGGATTATGGAGGTATTGAATACCGAA
TCCCGCATCATTGACGGGCATGAGACAGCTGGAGAAGAGGGCGTTATGGGTCAGGTGGAATTCCGTAATGTCAGCTTTAA
ATATCCGGATGCGGAGGAGCCTGTGCTTCGCAACATTAGCTTTACGGCAAAACAAGGCGAGACGGTTGCCTTTATTGGCG
CAACAGGCAGCGGTAAAACCAGCGTAATCAATCTGATTTCTCGTTTCTACGATGTGACTGAGGGAGAGGTACTCGTGGAT
GGTGTGAATGTCAGAAACTATAAGCAGCAGACACTCCATAACAAAATCGGGTATGTCCCACAGAGAGCCGTACTTTTCAG
CGGTACAGTGGCATCCAATGTTTCGTATGGCGATAACGGAAGAGCAGAAGCTTCGGAGAAACTCGTCAAAACAGCCGTGG
GGATTGCCCAAGGCACGGAATTTGTCGAAAAAATGGACGGTCAGTATCAAGGACGGATTTCACAAGGTGGAGCGAACGTG
TCCGGTGGTCAAAAGCAGCGTCTGTCCATTGCGCGTGCCATCTACCGTCAGCCGGAGATTTATATCTTCGATGATTCCTT
CTCGGCATTGGACTACAGAACAGACCGGATTCTGCGCTCGGCGCTTAAACAAGAAACCGGCCATGCTACGACACTCATTG
TTGCTCAGCGCATAGGCACCATTAAGGACGCTGACCGGATTATCGTTCTGGACCAGGGCGAGATTGTAGGGAACGGCACA
CACGAAGAGCTGATGGCGAATTGCAGCACCTATCAGGAGATCGCTTATTCGCAGCTTTCGAAGGAGGAACTCGTACATGG
ACAAGAATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52

100

0.53

Multiple sequence alignment