Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CP942_RS02590 Genome accession   NZ_CP023666
Coordinates   539057..539959 (-) Length   300 a.a.
NCBI ID   WP_105978910.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain Bac48     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 534057..544959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP942_RS02575 xerC 534416..535330 (-) 915 WP_105978908.1 tyrosine recombinase XerC -
  CP942_RS02580 trmFO 535397..536701 (-) 1305 WP_020451382.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CP942_RS02585 topA 536777..538852 (-) 2076 WP_105978909.1 type I DNA topoisomerase -
  CP942_RS02590 dprA 539057..539959 (-) 903 WP_105978910.1 DNA-processing protein DprA Machinery gene
  CP942_RS02595 sucD 540072..540974 (-) 903 WP_105978911.1 succinate--CoA ligase subunit alpha -
  CP942_RS02600 sucC 540993..542153 (-) 1161 WP_026579739.1 ADP-forming succinate--CoA ligase subunit beta -
  CP942_RS02605 - 542329..542613 (-) 285 WP_025811381.1 FlhB-like flagellar biosynthesis protein -
  CP942_RS02610 - 542610..544307 (-) 1698 WP_035400131.1 hypothetical protein -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33195.59 Da        Isoelectric Point: 10.1494

>NTDB_id=249077 CP942_RS02590 WP_105978910.1 539057..539959(-) (dprA) [Bacillus paralicheniformis strain Bac48]
MNDSSELLILLRLRGTLSPSLLTKWWKQDPSLSLTDEKNHLLTKLSLKRSDLCSIRKLAKQELSNVKRLIRSYEAAGVRM
AAICSPDYPASLKTIHDPPPVLFLKGDVKLLNEQRLIGIVGTRSPSLYGKRAAVHLVRELCKKSWTIVSGLAKGIDGLAH
QESICSKGRTIGVIAGGFNSIYPREHRQLAGQMAENHLLVSEHPPHVKPQKWHFPMRNRLISGLTEGIVVVQGKEKSGSL
ITAYQALEQGREVFAVPGPIFDANSFGPSRLVQEGAKLVLNIEDILSELPPSRTQYPEPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=249077 CP942_RS02590 WP_105978910.1 539057..539959(-) (dprA) [Bacillus paralicheniformis strain Bac48]
ATGAACGACAGCAGCGAGCTTTTGATATTGCTCCGCCTTCGCGGCACACTCTCCCCTTCTCTGCTGACCAAGTGGTGGAA
GCAGGATCCTTCCTTGTCTCTTACGGACGAAAAAAACCATCTTTTAACGAAGCTTTCATTAAAAAGATCAGACTTGTGCT
CCATACGAAAACTGGCGAAACAAGAACTGTCTAATGTTAAACGGCTCATCCGTTCTTACGAAGCGGCCGGAGTCCGCATG
GCCGCCATATGTTCCCCCGATTATCCAGCCAGCCTGAAAACCATTCATGACCCGCCTCCCGTCCTTTTTTTAAAAGGAGA
TGTTAAACTTCTCAATGAACAAAGACTGATCGGAATCGTCGGAACCCGCAGCCCGTCATTATACGGAAAAAGAGCAGCGG
TTCACCTTGTCAGGGAGCTTTGCAAAAAAAGCTGGACGATCGTCAGCGGCCTTGCAAAAGGAATTGACGGTCTTGCCCAT
CAGGAGAGCATCTGTTCAAAGGGAAGGACAATCGGCGTCATCGCGGGCGGATTCAATAGCATATATCCCCGTGAACACCG
CCAGCTCGCCGGTCAAATGGCCGAAAACCACCTGCTGGTATCAGAGCACCCTCCCCACGTTAAACCTCAAAAATGGCACT
TTCCGATGCGAAATCGGCTGATCAGCGGATTAACGGAAGGAATCGTTGTCGTCCAGGGAAAGGAAAAGAGCGGGTCGCTC
ATCACAGCATATCAAGCCCTTGAGCAGGGGCGGGAGGTGTTCGCCGTGCCTGGTCCGATCTTTGACGCCAACTCTTTCGG
TCCTTCAAGGCTGGTCCAGGAAGGGGCGAAACTCGTATTGAATATTGAAGATATTTTGAGCGAACTGCCGCCTTCACGCA
CTCAATATCCGGAACCTGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

56.856

99.667

0.567

Multiple sequence alignment