Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CP942_RS02560 Genome accession   NZ_CP023666
Coordinates   531619..532398 (-) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus paralicheniformis strain Bac48     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 526619..537398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP942_RS02530 fliH 526662..527429 (-) 768 WP_020451392.1 flagellar assembly protein FliH -
  CP942_RS02535 fliG 527413..528429 (-) 1017 WP_020451391.1 flagellar motor switch protein FliG -
  CP942_RS02540 fliF 528443..530044 (-) 1602 WP_020451390.1 flagellar basal-body MS-ring/collar protein FliF -
  CP942_RS02545 fliE 530095..530412 (-) 318 WP_105978907.1 flagellar hook-basal body complex protein FliE -
  CP942_RS02550 flgC 530426..530878 (-) 453 WP_020451388.1 flagellar basal body rod protein FlgC -
  CP942_RS02555 flgB 530878..531267 (-) 390 WP_020451387.1 flagellar basal body rod protein FlgB -
  CP942_RS02560 codY 531619..532398 (-) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CP942_RS02565 hslU 532437..533840 (-) 1404 WP_020451385.1 HslU--HslV peptidase ATPase subunit -
  CP942_RS02570 hslV 533857..534402 (-) 546 WP_020451384.1 ATP-dependent protease subunit HslV -
  CP942_RS02575 xerC 534416..535330 (-) 915 WP_105978908.1 tyrosine recombinase XerC -
  CP942_RS02580 trmFO 535397..536701 (-) 1305 WP_020451382.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=249076 CP942_RS02560 WP_003181756.1 531619..532398(-) (codY) [Bacillus paralicheniformis strain Bac48]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=249076 CP942_RS02560 WP_003181756.1 531619..532398(-) (codY) [Bacillus paralicheniformis strain Bac48]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGACTATACAAAAAGTCTGTTC
AACATTCCGGAAACTTCATCCAACCTTGACATTAACAGCGAATATACGGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACAGTCGTTCCGATCATCGGAGGAGGCGAAAGACTCGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCTGAATATGGCGCAACGGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCTGAA
GAGATCGAAGAGGAAGCACGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCATTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAAGAGCTTGACGGAAATGAAGGTCTGCTTGTCGCAAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAATGCGCTGCGCAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCATTAGGGATGAAAGGCACA
TACATTAAAGTCCTGAACAACAAATTTTTAATGGAATTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment