Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CP943_RS09300 Genome accession   NZ_CP023665
Coordinates   1818121..1818900 (+) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus paralicheniformis strain Bac84     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1813121..1823900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP943_RS09280 trmFO 1813818..1815122 (+) 1305 WP_020451382.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CP943_RS09285 xerC 1815189..1816103 (+) 915 WP_020451383.1 tyrosine recombinase XerC -
  CP943_RS09290 hslV 1816117..1816662 (+) 546 WP_020451384.1 ATP-dependent protease subunit HslV -
  CP943_RS09295 hslU 1816679..1818082 (+) 1404 WP_025811384.1 HslU--HslV peptidase ATPase subunit -
  CP943_RS09300 codY 1818121..1818900 (+) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CP943_RS09305 flgB 1819252..1819641 (+) 390 WP_020451387.1 flagellar basal body rod protein FlgB -
  CP943_RS09310 flgC 1819641..1820093 (+) 453 WP_020451388.1 flagellar basal body rod protein FlgC -
  CP943_RS09315 fliE 1820107..1820424 (+) 318 WP_020451389.1 flagellar hook-basal body complex protein FliE -
  CP943_RS09320 fliF 1820475..1822076 (+) 1602 WP_020451390.1 flagellar basal-body MS-ring/collar protein FliF -
  CP943_RS09325 fliG 1822090..1823106 (+) 1017 WP_020451391.1 flagellar motor switch protein FliG -
  CP943_RS09330 fliH 1823090..1823857 (+) 768 WP_020451392.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=249032 CP943_RS09300 WP_003181756.1 1818121..1818900(+) (codY) [Bacillus paralicheniformis strain Bac84]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=249032 CP943_RS09300 WP_003181756.1 1818121..1818900(+) (codY) [Bacillus paralicheniformis strain Bac84]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGACTATACAAAAAGTCTGTTC
AACATTCCGGAAACTTCATCCAACCTTGACATTAACAGCGAATATACGGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACAGTCGTTCCGATCATCGGAGGGGGCGAAAGACTCGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCAACGGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCTGAA
GAGATCGAAGAGGAAGCACGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCATTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAAGAGCTTGACGGAAATGAAGGTCTGCTTGTCGCAAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAATGCGCTGCGCAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCATTAGGGATGAAAGGCACA
TACATTAAAGTCCTGAACAACAAATTTTTAATGGAATTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment