Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   CPF12_RS09630 Genome accession   NZ_CP023643
Coordinates   2020844..2023222 (+) Length   792 a.a.
NCBI ID   WP_069126671.1    Uniprot ID   A0A1D2LFR3
Organism   Brochothrix thermosphacta strain BII     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2015844..2028222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPF12_RS09615 (CPF12_09615) - 2016877..2018019 (+) 1143 WP_069126285.1 cysteine desulfurase family protein -
  CPF12_RS09620 (CPF12_09620) mnmA 2018034..2019152 (+) 1119 WP_029091218.1 tRNA 2-thiouridine(34) synthase MnmA -
  CPF12_RS09625 (CPF12_09625) - 2020160..2020822 (+) 663 WP_029091219.1 tetratricopeptide repeat protein -
  CPF12_RS09630 (CPF12_09630) recD2 2020844..2023222 (+) 2379 WP_069126671.1 ATP-dependent RecD-like DNA helicase Machinery gene
  CPF12_RS09635 (CPF12_09635) - 2023784..2024332 (+) 549 WP_069133810.1 hypothetical protein -
  CPF12_RS09640 (CPF12_09640) - 2024849..2025271 (+) 423 WP_029091221.1 organic hydroperoxide resistance protein -
  CPF12_RS09645 (CPF12_09645) - 2025300..2025734 (+) 435 WP_029091222.1 MarR family winged helix-turn-helix transcriptional regulator -
  CPF12_RS09650 (CPF12_09650) - 2025727..2026383 (+) 657 WP_029091223.1 nitroreductase family protein -
  CPF12_RS09655 (CPF12_09655) - 2026387..2026761 (+) 375 WP_029091224.1 DUF1304 domain-containing protein -
  CPF12_RS09660 (CPF12_09660) - 2026804..2027334 (-) 531 WP_029091225.1 hypothetical protein -

Sequence

Protein


Download         Length: 792 a.a.        Molecular weight: 88538.93 Da        Isoelectric Point: 4.9265

>NTDB_id=248866 CPF12_RS09630 WP_069126671.1 2020844..2023222(+) (recD2) [Brochothrix thermosphacta strain BII]
MTDTMNTSEGENIPPYVKGNVVTTIFHNATNLFSVLRMEVKESNVEWDDREIVITGYLPELSQEDRYHLEGKVSEHPKYG
RQFQVTTFRKEMPATKAGVSTYLSGEMFKGVGKKTAERIVDILGNDAISRILQDPTVLDQVPKLTTKLKESLAKTLQENE
GIELVMIKLNEMGFGPQLAMRIFQTYQQKTMEVINENPYQLIHDVTGIGFNRADELGQKIGMGGNHPSRLSAALMFTVDS
ESMQNGHVYMEYDETVLATKRLLLSSNGSSVIAENEISDALQELLQNNELVQEETRIYLPSLYHAEKGVAHHLMRLEKAQ
AKRTTFPKSEFLKALGELEERINVTYAPSQSDAIETALNSSTMILTGGPGTGKTTVIKGIVELFAELNGVSLDPSEYKDG
KTFPVVLAAPTGRAAKRMSESTNLPAMTIHRLLGMTGQENKSEDVDRDIEGQLLIIDETSMVDIWLANQLLRAVPTNMQV
IFVGDKDQLPSVGPGQFLKDILKSEVIPTISLTEIYRQAEGSSIIELAHHVKDGVLPADFTKNQSDRSFFRCNTQQLSEV
VGQVVKNAVKKGFTSKDIQVLIPMYRGPAGINKMNEELQEILNPNPEGKRKEITYGDVIYRVGDKVLQLVNQPESNVFNG
DMGTIVSIIYAKETVEKQDTLVIEFDQTEVTYLRGDLNQITHAYCCSVHKAQGSEFPIVILPLLKSYYRMLRRDILYTAM
TRSRQFLIMCGEEDAFAQATVRQSDVARQTSLFERLTRTTAELEPVNEAGEYILTPENIHSIDPMIGMVESP

Nucleotide


Download         Length: 2379 bp        

>NTDB_id=248866 CPF12_RS09630 WP_069126671.1 2020844..2023222(+) (recD2) [Brochothrix thermosphacta strain BII]
ATGACGGATACAATGAACACATCAGAGGGTGAAAATATACCACCGTATGTTAAAGGCAATGTGGTCACCACCATCTTTCA
TAATGCCACTAACTTGTTTTCTGTGTTGCGTATGGAAGTGAAAGAAAGTAATGTCGAATGGGATGACCGTGAAATTGTCA
TCACCGGTTATCTACCAGAACTTTCACAAGAAGACCGTTATCATTTAGAAGGAAAGGTATCAGAACATCCAAAGTATGGA
CGACAGTTTCAGGTCACAACTTTCAGAAAAGAAATGCCTGCGACTAAGGCGGGTGTTTCTACTTATTTATCTGGAGAAAT
GTTCAAAGGTGTCGGTAAAAAGACTGCTGAACGAATTGTCGATATACTAGGTAACGATGCAATTTCACGGATTTTACAAG
ATCCAACTGTGTTAGATCAAGTCCCAAAATTAACAACAAAATTAAAAGAATCATTAGCCAAAACACTTCAAGAAAATGAA
GGCATTGAATTGGTGATGATTAAACTTAATGAAATGGGATTTGGTCCCCAATTAGCGATGCGTATTTTTCAAACATATCA
ACAAAAAACGATGGAAGTTATTAATGAAAATCCGTATCAATTGATTCATGATGTCACAGGTATCGGCTTTAATCGTGCGG
ATGAACTGGGCCAAAAAATTGGTATGGGTGGTAATCATCCTTCTCGTTTAAGTGCAGCACTGATGTTTACAGTTGATTCG
GAAAGTATGCAAAACGGTCATGTTTATATGGAATACGATGAAACGGTATTAGCTACAAAGCGTTTATTATTAAGTAGTAA
TGGCTCTTCTGTCATTGCGGAAAATGAAATTAGTGACGCATTGCAAGAACTATTACAAAATAATGAGCTTGTGCAAGAAG
AGACACGTATCTATTTACCATCGTTGTATCATGCCGAAAAAGGTGTCGCACATCATTTAATGCGACTTGAAAAAGCACAG
GCGAAGCGTACAACTTTTCCGAAATCAGAGTTTTTAAAAGCGCTTGGTGAATTGGAAGAACGTATTAATGTAACGTATGC
ACCGTCTCAAAGTGATGCGATTGAAACAGCTTTAAATTCGTCAACAATGATTTTGACAGGTGGACCAGGTACAGGTAAAA
CAACTGTTATTAAAGGGATTGTTGAATTGTTTGCTGAATTAAATGGCGTTAGTCTAGATCCAAGTGAATATAAAGATGGA
AAAACATTCCCTGTCGTTTTGGCAGCACCCACGGGACGAGCAGCAAAACGTATGAGTGAATCGACTAATCTACCTGCGAT
GACAATTCATCGTTTATTGGGGATGACAGGTCAAGAAAATAAGTCTGAAGATGTTGATCGTGATATTGAAGGACAATTGC
TTATTATCGATGAAACAAGTATGGTTGATATTTGGCTAGCAAACCAACTGTTGCGAGCTGTGCCAACTAATATGCAGGTT
ATTTTTGTCGGTGATAAAGACCAGTTGCCATCAGTAGGGCCGGGTCAGTTTTTAAAAGATATTTTAAAATCAGAAGTCAT
TCCAACAATTTCGCTAACAGAAATTTATCGACAAGCAGAAGGCTCATCGATTATTGAATTGGCTCACCATGTAAAAGATG
GCGTTTTGCCTGCTGATTTTACTAAAAATCAGTCAGATCGTTCGTTTTTCCGTTGTAATACACAACAGTTGTCAGAAGTA
GTGGGGCAAGTGGTTAAAAATGCCGTGAAAAAAGGTTTTACTTCTAAGGATATTCAAGTGTTGATCCCGATGTATCGTGG
CCCTGCTGGAATTAATAAAATGAATGAAGAGCTGCAGGAAATTTTAAATCCTAACCCTGAGGGTAAGCGGAAAGAAATAA
CCTATGGCGATGTGATTTATCGTGTCGGTGATAAGGTGCTGCAACTTGTTAATCAGCCTGAGAGTAACGTTTTTAATGGT
GATATGGGAACAATTGTATCAATTATCTATGCGAAGGAAACCGTCGAAAAACAAGATACGCTTGTCATTGAATTTGATCA
AACAGAAGTGACATACTTACGCGGTGATTTGAACCAAATTACGCATGCCTATTGTTGCTCTGTGCATAAAGCACAAGGAT
CTGAATTCCCAATTGTTATTTTACCGTTATTAAAAAGTTATTATCGAATGTTACGCCGTGATATTTTATACACAGCGATG
ACTAGAAGTCGGCAATTTTTAATTATGTGTGGCGAAGAAGATGCCTTTGCGCAAGCGACAGTGAGGCAATCAGATGTTGC
ACGACAAACATCGTTATTTGAACGACTTACGCGTACAACTGCAGAGTTAGAACCGGTGAATGAAGCAGGAGAATATATTT
TAACACCTGAAAATATTCATTCAATTGACCCAATGATTGGTATGGTAGAGAGTCCGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(346-553)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-665)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D2LFR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

55.742

97.854

0.545

Multiple sequence alignment