Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   DBP13_RS30065 Genome accession   NZ_CP028834
Coordinates   6520608..6522746 (+) Length   712 a.a.
NCBI ID   WP_108013521.1    Uniprot ID   -
Organism   Streptomyces sp. M2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6515608..6527746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBP13_RS30040 - 6516056..6516484 (+) 429 WP_108013516.1 VOC family protein -
  DBP13_RS30045 fdhA 6516578..6517804 (-) 1227 WP_108013517.1 formaldehyde dehydrogenase, glutathione-independent -
  DBP13_RS30050 - 6517911..6518465 (-) 555 WP_108013518.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  DBP13_RS30055 - 6518515..6519426 (-) 912 WP_108013519.1 glycerophosphodiester phosphodiesterase family protein -
  DBP13_RS30060 - 6519705..6520568 (+) 864 WP_128803370.1 MHYT domain-containing protein -
  DBP13_RS30065 uvrB 6520608..6522746 (+) 2139 WP_108013521.1 excinuclease ABC subunit UvrB Machinery gene
  DBP13_RS30070 - 6522909..6523487 (+) 579 WP_037782640.1 TerD family protein -
  DBP13_RS30075 - 6523574..6525574 (+) 2001 WP_128803371.1 TerD family protein -
  DBP13_RS30080 - 6525807..6526817 (+) 1011 WP_128803372.1 TerC/Alx family metal homeostasis membrane protein -

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 80084.85 Da        Isoelectric Point: 4.9927

>NTDB_id=248513 DBP13_RS30065 WP_108013521.1 6520608..6522746(+) (uvrB) [Streptomyces sp. M2]
MRPVSSIERTVAPFEVVSPYQPSGDQPQAIADLARRIRAGEKDVVLLGATGTGKSATTAWMIEQLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLRVGDEIDRDQLLRRFVDIQYTRNDLAFSRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPVTG
EIISDDEHLYVFPASHYVAGPERMERAVNDIEKELGERLAELEKQGKLLEAQRLRMRTTYDLEMLRQIGSCSGVENYSMH
FDGRLPGSPPNTLLDYFPDDFLLVIDESHNTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQKRIGQTVYL
SATPGKYELSRGNGVVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRTRTEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRAGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKMTPAMERAIEETNRRREKQVAYNKERGIDPQPLRKKINDIVAQIAREDVDTEQLLGSGYRKSKDGKGAKAPVPALGG
KAAGGARSAKGKAKETVPTDRPAAELADQIEEMTARMRAAAADLQFEIAARLRDEISEMKKELRQMREAGLA

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=248513 DBP13_RS30065 WP_108013521.1 6520608..6522746(+) (uvrB) [Streptomyces sp. M2]
ATGCGGCCCGTTTCCAGCATCGAACGCACGGTGGCGCCCTTCGAGGTCGTCAGTCCCTACCAGCCCAGCGGCGACCAGCC
CCAGGCCATCGCCGACCTCGCCCGGCGCATCCGGGCGGGCGAGAAGGACGTCGTCCTGCTCGGCGCGACCGGCACCGGCA
AGTCCGCCACCACCGCGTGGATGATCGAGCAGCTCCAGCGCCCCACGCTCGTCATGGCACCGAACAAGACCCTGGCAGCC
CAGCTGGCGAACGAGTTCCGCGAACTCCTGCCGAACAACGCGGTGGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCCTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAGCGCCTGCGCCACT
CCGCGACCAACTCGCTGCTCACCCGCCGCGACGTCGTCGTGGTCGCCTCGGTGTCCTGCATCTACGGCCTCGGCACGCCC
CAGGAGTACGTCGACCGCATGGTCCCCCTCAGGGTCGGCGACGAGATCGACCGGGACCAGCTGCTGCGCCGCTTCGTCGA
CATCCAGTACACGCGCAACGACCTCGCGTTCAGCCGGGGCACCTTCCGCGTCCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTGGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCCCTGTCCACGCTCCACCCGGTCACCGGC
GAGATCATCAGCGACGACGAGCACCTGTACGTCTTCCCGGCGTCCCACTATGTCGCGGGCCCCGAGCGCATGGAGCGGGC
CGTCAACGACATCGAGAAGGAACTCGGCGAGCGCCTGGCCGAGTTGGAGAAGCAGGGCAAGCTCCTGGAGGCCCAGCGCC
TGCGGATGCGTACGACCTACGACCTGGAGATGCTCCGCCAGATCGGCTCCTGCTCCGGCGTGGAGAACTACTCGATGCAC
TTCGACGGCCGGCTGCCGGGATCGCCGCCCAACACCCTGCTCGACTACTTCCCGGACGACTTCCTGCTGGTCATCGACGA
GTCGCACAACACGGTCCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGCAAGCGCACCCTCGTCGACCACGGCT
TCCGGCTGCCCTCCGCCCTCGACAACCGTCCGCTGAAGTGGGAGGAGTTCCAGAAGCGCATCGGACAGACCGTCTATCTG
TCGGCCACCCCGGGCAAATACGAGCTCTCGCGCGGGAACGGCGTCGTCGAGCAGATCATCCGCCCCACCGGCCTCGTCGA
CCCGGAGGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCACCCGCACCGAGAAGGACG
AGCGCGTCCTGGTCACCACGCTCACCAAGAAGATGGCCGAGGACCTCACGGACTACTTCCTCGAACTCGGCATCCAGGTG
CGCTATCTGCACAGCGACGTCGACACCCTGCGCCGCGTCGAGCTGCTGCGCGAGCTGCGCGCGGGCGAGTTCGACGTCCT
GGTCGGCATCAACCTCCTGCGCGAGGGCCTCGACCTGCCCGAGGTGTCGCTCGTGGCGATCCTCGACGCCGACAAGGAGG
GCTTCCTGCGCTCGGGCACCTCTTTGATCCAGACCATCGGCCGCGCGGCGCGCAATGTCTCCGGCCAGGTCCATATGTAC
GCCGACAAGATGACCCCGGCGATGGAGAGGGCCATCGAGGAGACCAACCGCCGCCGGGAGAAGCAGGTCGCGTACAACAA
GGAGCGGGGCATCGACCCCCAGCCGCTCCGCAAGAAGATCAACGACATCGTGGCGCAGATCGCCCGCGAGGACGTCGACA
CGGAACAGCTGCTCGGCTCCGGTTACCGCAAGTCGAAGGACGGCAAGGGCGCCAAGGCACCCGTGCCCGCGCTCGGCGGC
AAGGCGGCCGGCGGGGCCAGGTCCGCGAAGGGCAAGGCCAAGGAGACGGTCCCGACCGACCGCCCGGCGGCCGAACTGGC
CGACCAGATCGAGGAGATGACGGCACGGATGCGGGCCGCCGCCGCCGACCTCCAGTTCGAGATCGCGGCCCGGCTGCGCG
ACGAGATCTCCGAGATGAAGAAGGAACTGCGCCAGATGCGAGAGGCGGGCCTGGCCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(441-551)

UvrB/uvrC motif (UVR)

(669-701)

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB interaction domain (UvrB_inter)

(169-257)

Type III restriction enzyme, res subunit (ResIII)

(25-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.849

96.629

0.559
  uvrB Streptococcus pneumoniae R6

57.849

96.629

0.559
  uvrB Streptococcus pneumoniae D39

57.849

96.629

0.559

Multiple sequence alignment