Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DBP13_RS26515 Genome accession   NZ_CP028834
Coordinates   5758621..5760354 (-) Length   577 a.a.
NCBI ID   WP_108007678.1    Uniprot ID   -
Organism   Streptomyces sp. M2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5753621..5765354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBP13_RS26505 - 5755356..5756660 (+) 1305 WP_108007676.1 RNA polymerase sigma factor -
  DBP13_RS26510 rcrQ 5756693..5758621 (-) 1929 WP_128803027.1 ABC transporter ATP-binding protein Regulator
  DBP13_RS26515 rcrP 5758621..5760354 (-) 1734 WP_108007678.1 ABC transporter ATP-binding protein Regulator
  DBP13_RS26520 - 5760470..5761927 (-) 1458 WP_108007679.1 FGGY family carbohydrate kinase -
  DBP13_RS26525 - 5762056..5762361 (-) 306 WP_108008059.1 hypothetical protein -
  DBP13_RS26545 - 5763049..5764638 (-) 1590 WP_164932250.1 tyrosine-type recombinase/integrase -
  DBP13_RS26550 - 5764824..5765027 (+) 204 WP_128803029.1 DNA-binding protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62654.02 Da        Isoelectric Point: 6.6986

>NTDB_id=248510 DBP13_RS26515 WP_108007678.1 5758621..5760354(-) (rcrP) [Streptomyces sp. M2]
MLIRLLRTYLRPYKKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMIGISLVQVVCNIGAVYFGA
RTASALGRDVRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMSFTLMVSAPIMCVGGIVLALGLDVPLSAV
LVAVVPTLGICVTLIVRRLRPLFRAMQKRLDTVNRVLREQITGNRVIRAFVRDEYEKDRFKKANSDLTEMQLATGNMLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETSSSVVP
PVAPVTELRRHGHLEIRGAGFRYPGAEEPVLRAIDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGTDVA
TLDPKLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKDFVTKLEGGLNAPIAQGGSNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAEETSEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=248510 DBP13_RS26515 WP_108007678.1 5758621..5760354(-) (rcrP) [Streptomyces sp. M2]
GTGCTCATACGACTTCTGCGGACCTACCTCAGGCCCTACAAGAAACCCATTGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTGTACCTGCCCACTCTGAACGCCCACATCATCGACAACGGTGTCGTGAAGGGTGACACCGGGTACA
TCCTCTCCTTCGGCGCCCTGATGATCGGCATCTCACTGGTGCAGGTCGTCTGCAACATCGGTGCCGTGTACTTCGGCGCG
CGGACCGCCTCGGCCCTCGGCCGGGACGTACGGGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCGCGCGAGGTCGG
CCACTTCGGTGCGCCCTCGCTGATCACCCGTACCACCAATGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGTCGTTCA
CGCTGATGGTGTCCGCGCCGATCATGTGCGTCGGCGGCATCGTGCTGGCCCTGGGCCTGGACGTACCGCTGTCCGCGGTG
CTGGTCGCGGTGGTGCCGACCCTGGGCATCTGCGTGACGCTGATCGTGCGCAGGCTGCGGCCGCTGTTCCGGGCCATGCA
GAAGCGCCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGTGTGATCAGGGCCTTCGTCCGGGACG
AGTACGAGAAGGACCGGTTCAAGAAGGCCAACTCCGATCTCACCGAGATGCAGCTGGCCACCGGCAACATGCTGGCGCTG
ATGTTCCCGATCGTCATGACCGTGGTGAACCTGTCGTCGATCGCCGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGCGATCTGACCGCCTTCCTCGCCTATCTCATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCTGAGGTCTGCGCCGAGCGGATCCAGGAGGTCCTGGAGACCTCCTCCAGCGTGGTGCCG
CCGGTGGCGCCGGTCACCGAGCTGCGCCGGCACGGGCATCTGGAGATCCGCGGCGCCGGGTTCCGCTACCCCGGTGCCGA
GGAGCCGGTGCTCAGGGCGATCGACCTGGTGGCCCGGCCCGGCGAGGTGACGGCCGTGATCGGCTCGACCGGCAGCGGCA
AGTCCACGCTGCTCGGGCTGGTGCCGCGGCTGTTCGACGCGACCGACGGCGAGGTCCTCGTCGACGGCACGGACGTCGCC
ACCCTCGACCCGAAGCTGCTGGCGAAGACGGTCGGGCTCGTACCGCAGAAGCCTTATCTGTTCGCGGGCACGGTGGCGAC
CAACTTGCGCTACGGCAATCCGGACGCCACCGACGAGGAACTGTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGACTTCG
TCACCAAGCTGGAGGGCGGGCTGAACGCGCCCATCGCCCAGGGCGGTTCGAACGTCTCCGGCGGCCAGCGGCAGCGGCTC
GCCATCGCCCGTACGCTCGTCCAGCGCCCGGAGATCTATCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACGGA
CGCGGCGCTGCGGGCGGCGCTGGCCGAGGAGACCTCGGAGGCGACCGTCGTCATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGCGTCGTCGGTACCGGCCGCCATCACGAGCTGATGGACGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.66

100

0.39

Multiple sequence alignment