Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   DBP13_RS24610 Genome accession   NZ_CP028834
Coordinates   5324694..5326952 (+) Length   752 a.a.
NCBI ID   WP_108012951.1    Uniprot ID   -
Organism   Streptomyces sp. M2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5319694..5331952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBP13_RS24595 - 5320066..5322012 (-) 1947 WP_108012954.1 substrate-binding domain-containing protein -
  DBP13_RS24600 - 5322002..5323540 (-) 1539 WP_108012953.1 sugar ABC transporter ATP-binding protein -
  DBP13_RS24605 - 5323537..5324565 (-) 1029 WP_108012952.1 LacI family DNA-binding transcriptional regulator -
  DBP13_RS24610 recD/recD2/recDB 5324694..5326952 (+) 2259 WP_108012951.1 ATP-dependent RecD-like DNA helicase Machinery gene
  DBP13_RS24615 - 5327203..5328492 (+) 1290 WP_108012950.1 citrate synthase -
  DBP13_RS24620 - 5329130..5331400 (-) 2271 WP_108012949.1 heavy metal translocating P-type ATPase -
  DBP13_RS24625 - 5331422..5331661 (-) 240 WP_108013301.1 cation transporter -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 81446.16 Da        Isoelectric Point: 6.7354

>NTDB_id=248503 DBP13_RS24610 WP_108012951.1 5324694..5326952(+) (recD/recD2/recDB) [Streptomyces sp. M2]
MAQQTGDPTGERRLAVLEGVLERITYANEENGYTVARVDTGRGGGDLLTVVGSLLGAQVGESLRMEGRWGSHPQYGKQFT
VENYTTVLPATVQGIRRYLGSGLVKGIGPVFADRITQHFGLDTLQIIEEEPKRLIEVPGLGPKRTKKIADAWEEQKAIKE
VMLFLQTVEVSTSIAVRIYKKYGDASISVVKNQPYRLASDVWGIGFLTADRIAQSVGIPHDSPERVKAGLQYALSQATDQ
GNCYLPEEQLIADAVKLLQVDTGLVIECLAELAAEPEEGEDPGVVREKVPGPDGGDPVTAVYLVPFHRAELSLSAQLLRL
LRTDEDRMPGFRDVAWDKALGWLKGRTGADLAPEQEAAVKLALTQKVAVLTGGPGCGKSFTVRSVVELARAKKARVVLAA
PTGRAAKRLSELTGAEASTVHRLLELKPGGDAAYDKDRPLQADLVVVDEASMLDLLLANKLVKAVPPGAHLLFVGDVDQL
PSVGAGEVLRDLLADGGPIPAVRLTRVFRQAQQSGVVTNAHRINSGQHPVTDGMKDFFLFVEDDTEEAGRLTVDVAARRI
PARFGLDPRRDVQVLAPMHRGPAGAGTLNGLLQQAITPGRPDLPEKRFGGRVFRVGDKVTQIRNNYEKGKNGVFNGTVGV
VTSLDPVDQRLTVLTDEDEEVPYEFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVVL
VGSRKAIGQAVRTVSAGRRCTALDFRLSPRLL

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=248503 DBP13_RS24610 WP_108012951.1 5324694..5326952(+) (recD/recD2/recDB) [Streptomyces sp. M2]
GTGGCTCAGCAGACGGGGGACCCCACGGGCGAACGGCGCCTCGCCGTGCTGGAGGGCGTCCTGGAGCGCATCACGTACGC
CAACGAGGAGAACGGCTACACGGTCGCGCGGGTCGACACCGGCCGCGGCGGCGGCGACCTGCTCACCGTCGTCGGCTCGC
TGCTCGGCGCCCAGGTCGGCGAGTCCCTGCGGATGGAGGGCCGTTGGGGCTCCCACCCGCAGTACGGCAAGCAGTTCACG
GTGGAGAACTACACGACGGTGTTGCCGGCCACGGTCCAGGGCATCCGCCGCTATCTCGGCTCCGGCCTGGTCAAGGGCAT
CGGCCCGGTCTTCGCCGACCGCATCACCCAGCACTTCGGCCTGGACACCCTGCAGATCATCGAGGAGGAGCCCAAGCGCC
TGATCGAGGTCCCCGGGCTCGGCCCCAAGCGCACCAAGAAGATCGCCGACGCCTGGGAGGAGCAGAAGGCGATCAAGGAG
GTCATGCTCTTCCTGCAGACCGTCGAGGTCTCCACCTCCATCGCCGTGCGCATCTACAAGAAGTACGGCGACGCCTCGAT
CTCCGTGGTCAAGAACCAGCCCTACCGCCTCGCGTCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACCGGATCGCCC
AGTCCGTCGGCATCCCGCACGACAGCCCCGAGCGCGTGAAGGCCGGCCTGCAGTACGCGCTCTCGCAGGCCACCGACCAG
GGCAACTGCTATCTGCCCGAGGAGCAGTTGATCGCCGACGCGGTCAAGCTGCTCCAGGTCGACACCGGCCTGGTCATCGA
ATGCCTCGCCGAGCTCGCCGCCGAGCCGGAGGAGGGCGAGGACCCCGGGGTCGTACGGGAGAAGGTGCCGGGCCCGGACG
GCGGCGACCCGGTGACGGCCGTCTACCTCGTCCCCTTCCACCGCGCCGAACTGTCCCTGTCCGCCCAGTTGTTGCGCCTG
CTGCGCACCGACGAGGACCGTATGCCGGGCTTTCGCGACGTGGCCTGGGACAAGGCGCTGGGCTGGCTGAAGGGGCGCAC
GGGCGCGGACCTCGCGCCCGAGCAGGAGGCCGCCGTCAAGCTGGCGCTGACCCAGAAGGTCGCCGTGCTGACCGGCGGAC
CGGGCTGCGGCAAGTCCTTCACCGTCCGCTCGGTGGTGGAGTTGGCCCGCGCCAAGAAGGCGAGGGTGGTCCTGGCGGCC
CCCACCGGCCGCGCCGCCAAGCGGCTGTCCGAGCTCACCGGCGCCGAGGCCTCCACCGTGCACCGCCTGCTGGAGCTCAA
GCCCGGCGGCGACGCGGCGTACGACAAGGACCGTCCCCTGCAGGCCGACCTGGTGGTGGTCGACGAGGCGTCCATGCTGG
ACCTGCTGCTCGCCAACAAGCTGGTCAAGGCGGTCCCGCCGGGTGCCCATCTGCTCTTCGTCGGGGACGTGGACCAGCTG
CCGAGCGTCGGCGCGGGGGAGGTGCTCAGGGACCTCCTCGCGGACGGCGGCCCGATCCCGGCGGTGCGCCTGACGCGGGT
GTTCCGCCAGGCCCAGCAGTCGGGCGTGGTCACCAACGCCCACCGGATCAACTCCGGGCAGCATCCGGTCACGGACGGCA
TGAAGGACTTCTTCCTCTTCGTCGAGGACGACACCGAGGAGGCCGGGCGGCTCACCGTGGACGTGGCCGCCCGCCGCATC
CCGGCCAGGTTCGGCCTCGACCCGCGCCGGGACGTGCAGGTCCTCGCCCCGATGCACCGCGGCCCGGCCGGCGCCGGCAC
GCTCAACGGCCTGCTGCAGCAGGCGATCACCCCGGGCCGGCCCGACCTGCCCGAGAAGAGATTCGGCGGCCGGGTCTTCC
GGGTCGGCGACAAGGTCACCCAGATTCGCAACAATTACGAGAAGGGCAAGAACGGTGTCTTCAACGGCACCGTGGGCGTG
GTCACCTCGCTCGACCCGGTCGACCAGCGCCTGACGGTGCTGACCGACGAGGACGAGGAGGTTCCGTACGAATTCGACGA
ACTGGACGAACTGGCTCACGCGTACGCGGTGACCATTCACCGCTCGCAGGGGAGTGAATACCCGGCCGTGGTGATCCCGG
TCACCACGGGCGCCTGGATGATGCTCCAGCGCAACCTCCTCTACACGGCGGTCACACGGGCCAAGAAGCTGGTCGTCCTC
GTCGGTTCACGCAAGGCGATCGGCCAGGCGGTGCGCACGGTGTCGGCGGGACGGCGCTGTACGGCACTCGACTTCAGGCT
TTCCCCCCGGCTCCTGTGA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(588-653)

AAA domain (AAA_30)

(351-529)

Helix-hairpin-helix containing domain (HHH_RecD2)

(154-244)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)

Helix-hairpin-helix domain (HHH_5)

(104-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.659

100

0.367