Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   CPG34_RS02090 Genome accession   NZ_CP023545
Coordinates   424567..425082 (+) Length   171 a.a.
NCBI ID   WP_002793754.1    Uniprot ID   -
Organism   Campylobacter coli strain CFSAN032805     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 419567..430082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPG34_RS02065 (CPG34_02065) - 420023..420361 (+) 339 WP_002777761.1 hypothetical protein -
  CPG34_RS02070 (CPG34_02070) - 420370..421095 (+) 726 WP_002780542.1 phosphatidate cytidylyltransferase -
  CPG34_RS02075 (CPG34_02075) dxr 421092..422168 (+) 1077 WP_002777756.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  CPG34_RS02080 (CPG34_02080) - 422165..423559 (+) 1395 WP_002793756.1 M99 family carboxypeptidase catalytic domain-containing protein -
  CPG34_RS02085 (CPG34_02085) tsaD 423556..424563 (+) 1008 WP_002780547.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  CPG34_RS02090 (CPG34_02090) ctsG 424567..425082 (+) 516 WP_002793754.1 type II secretion system protein Machinery gene
  CPG34_RS02095 (CPG34_02095) - 425082..426322 (+) 1241 Protein_405 DUF2920 family protein -
  CPG34_RS02100 (CPG34_02100) - 426334..428163 (+) 1830 WP_096788362.1 motility associated factor glycosyltransferase family protein -
  CPG34_RS02105 (CPG34_02105) - 428160..429989 (+) 1830 WP_096788363.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18736.59 Da        Isoelectric Point: 7.1358

>NTDB_id=248342 CPG34_RS02090 WP_002793754.1 424567..425082(+) (ctsG) [Campylobacter coli strain CFSAN032805]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKKDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLLFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=248342 CPG34_RS02090 WP_002793754.1 424567..425082(+) (ctsG) [Campylobacter coli strain CFSAN032805]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTAAAAAAGGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTCTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

91.228

100

0.912

Multiple sequence alignment