Detailed information NTG0247728

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: CO689_RS13440
• Genome accession: NZ_CP023497
• Coordinates: 2604482..2606896 (-)
• Length: 804 a.a.
• NCBI ID: WP_002481104.1
• Uniprot ID: -
• Organism: Staphylococcus simulans strain FDAARGOS_383
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2599482..2611896

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CO689_RS13415 (CO689_13415)	-	2599560..2600201 (-)	642	WP_002481099.1	O-methyltransferase	-
CO689_RS13420 (CO689_13420)	-	2600444..2600755 (-)	312	WP_002481100.1	DUF1292 domain-containing protein	-
CO689_RS13425 (CO689_13425)	ruvX	2600780..2601205 (-)	426	WP_002481101.1	Holliday junction resolvase RuvX	-
CO689_RS13430 (CO689_13430)	-	2601209..2601472 (-)	264	WP_023015119.1	IreB family regulatory phosphoprotein	-
CO689_RS13435 (CO689_13435)	alaS	2601541..2604171 (-)	2631	WP_096754664.1	alanine--tRNA ligase	-
CO689_RS13440 (CO689_13440)	recD2	2604482..2606896 (-)	2415	WP_002481104.1	ATP-dependent RecD-like DNA helicase	Machinery gene
CO689_RS13445 (CO689_13445)	-	2606899..2607567 (-)	669	WP_002481105.1	tetratricopeptide repeat protein	-
CO689_RS13450 (CO689_13450)	mnmA	2607669..2608781 (-)	1113	WP_002481106.1	tRNA 2-thiouridine(34) synthase MnmA	-
CO689_RS13455 (CO689_13455)	-	2608784..2609926 (-)	1143	WP_096754665.1	cysteine desulfurase family protein	-
CO689_RS13460 (CO689_13460)	-	2610109..2611113 (+)	1005	WP_002481108.1	LLM class flavin-dependent oxidoreductase	-
CO689_RS13465 (CO689_13465)	-	2611208..2611414 (-)	207	WP_002481109.1	CsbD family protein	-

Sequence

Protein

• Length: 804 a.a.
• Molecular weight: 90588.97 Da
• Isoelectric Point: 4.4952

>NTDB_id=247728 CO689_RS13440 WP_002481104.1 2604482..2606896(-) (recD2) [Staphylococcus simulans strain FDAARGOS_383]
MENPTLFDYSMVKGTVEAILFQNKDNFYTVLKVDPIETNEDFDNMPTIVGFFPEIAEGDVYTFKGQAVTHPRYGKQLKAE
TFEKEVPQTKDAIISYLSSDLFKGVGKKTAENIVNTLGENTINKILDDRSVLEEVPNLSKKKQSQIADQIYSNQEVEKIM
IRLHDLGFGPKLAMSIYQVYQSDTLQTIEKNPYDLVYDVRGVGFHKADTLAKNLGIEYNAPERLKAGLLYTIEEECIKQG
HTFLPKDYVLETSLEMLSKGYDQTIDASMLEKMILELTEESKLVEADETLSIPSLYYSEVKSVQNLYRIASHQAKLENIE
QSDLQINIGEIEEMNGVNYASSQKEALETAINSKVMLLTGGPGTGKTTVIKGIVELYAETQGLSLSYDDYQEDDYPIALA
APTGRAAKRLQESTGLEAMTIHRLIGWSQDTKPEDVLENEITAKLIIIDEMSMVDTWLFHQFLNAVPIDAQIILVGDEDQ
LPSVGPGQVFKDLIDAKVIPRVNLTEVYRQQDGSSIIELAHKMKLGQPIDITERFHDRSFIPCTAEQIPDVVNKVVSSAV
KKGYDMSDIQVLAPMYRGSAGIKRLNKVLQDILNPKAEDAREIEFGEAVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFW
ARENELNKDILVVDFEGNEITFTKQDMMELTHAYCTSIHKAQGSEFPIVIMPIVKQYYRMLQRPIIYTGLTRAKQSLVFL
GDSQAFDIGMKTHGQVRMTRLAQLLRDYFGHESETNEEQADEQINDQTTSAPAQQLVELTEATIYEIDPMIGMGKVTPYT
FNHE

Nucleotide

• Length: 2415 bp

>NTDB_id=247728 CO689_RS13440 WP_002481104.1 2604482..2606896(-) (recD2) [Staphylococcus simulans strain FDAARGOS_383]
TTGGAGAACCCTACATTGTTTGACTATTCGATGGTCAAAGGAACAGTAGAAGCAATCTTATTTCAAAATAAAGATAATTT
CTATACCGTATTAAAAGTAGATCCGATTGAAACCAATGAAGATTTTGATAATATGCCTACAATTGTGGGGTTCTTTCCTG
AAATTGCTGAAGGCGATGTTTATACCTTCAAAGGTCAAGCTGTGACACACCCTAGATACGGCAAACAATTAAAAGCTGAA
ACTTTCGAAAAAGAAGTACCGCAAACAAAAGATGCGATTATCAGTTACTTATCAAGTGATTTGTTTAAAGGTGTCGGTAA
GAAAACGGCTGAAAATATCGTAAATACACTTGGTGAAAATACCATCAATAAAATTTTAGATGATCGTTCAGTCCTAGAAG
AAGTACCGAATTTATCTAAAAAGAAACAAAGCCAAATCGCAGATCAAATCTACAGTAATCAAGAAGTAGAAAAAATTATG
ATCAGACTTCATGATTTAGGCTTCGGTCCGAAATTAGCGATGAGCATCTATCAAGTTTATCAAAGTGATACCTTACAAAC
GATTGAGAAAAACCCGTATGATCTTGTCTATGATGTACGTGGTGTCGGTTTCCATAAAGCAGATACTTTAGCTAAGAATT
TAGGCATAGAATATAACGCCCCTGAACGCTTAAAAGCAGGTCTGCTTTATACGATAGAAGAAGAGTGTATTAAACAAGGT
CATACATTTTTACCTAAAGATTATGTATTAGAAACTTCGTTAGAGATGTTAAGCAAGGGATATGACCAAACGATAGATGC
CAGTATGTTAGAAAAAATGATACTTGAATTGACAGAAGAAAGTAAGTTGGTGGAAGCGGATGAAACACTTTCTATCCCAA
GCTTATATTATTCAGAAGTCAAAAGTGTGCAGAACCTGTATCGTATTGCGTCACATCAAGCTAAATTAGAGAATATCGAA
CAATCTGACTTACAAATCAATATTGGTGAAATCGAGGAAATGAATGGAGTCAACTACGCATCTTCTCAAAAAGAAGCACT
TGAAACAGCGATTAATTCAAAAGTCATGCTGTTGACAGGTGGTCCAGGTACAGGTAAAACAACGGTTATCAAAGGCATCG
TTGAACTCTATGCGGAAACGCAAGGTTTATCCTTATCCTATGACGATTACCAAGAAGATGATTATCCGATAGCGCTTGCT
GCACCTACAGGACGTGCAGCCAAACGTTTACAAGAATCAACTGGACTTGAAGCAATGACTATCCACCGTTTAATCGGCTG
GAGTCAAGATACCAAGCCTGAAGATGTCTTAGAAAATGAAATTACTGCTAAGCTCATCATTATTGATGAAATGTCAATGG
TAGATACATGGTTGTTTCATCAGTTCTTGAATGCAGTACCGATTGATGCACAAATCATTTTAGTCGGAGATGAAGACCAA
TTACCATCAGTCGGCCCAGGACAAGTCTTTAAAGATTTAATTGATGCGAAAGTCATTCCACGTGTTAATTTAACTGAAGT
CTACCGTCAACAAGATGGTTCTAGTATCATTGAACTCGCACATAAAATGAAATTAGGTCAGCCGATAGACATTACTGAGC
GATTCCACGATCGCAGCTTTATTCCTTGTACAGCTGAACAAATACCAGATGTAGTCAATAAAGTGGTGAGTTCTGCTGTT
AAAAAAGGCTACGATATGAGCGATATTCAAGTCTTGGCTCCGATGTATCGCGGCAGTGCCGGCATTAAGCGTTTAAATAA
AGTATTACAAGATATCTTGAATCCTAAAGCTGAAGATGCAAGAGAGATTGAGTTCGGAGAAGCGGTCTTTAGAAAGGGCG
ACAAAGTCTTACAACTTGTGAATCGTCCTAATGATAATATTTTCAATGGTGATATCGGTGTGATTGTCGGTATCTTCTGG
GCACGTGAAAACGAATTAAATAAAGATATACTTGTCGTTGATTTCGAAGGCAATGAAATTACATTTACCAAACAAGATAT
GATGGAGTTAACACATGCTTATTGTACTTCCATTCATAAAGCACAAGGTTCAGAGTTTCCAATTGTTATTATGCCGATTG
TAAAACAATATTATCGCATGTTGCAGCGTCCGATTATCTATACAGGACTTACACGTGCCAAACAATCTTTAGTTTTTCTT
GGTGACAGCCAAGCCTTTGACATCGGTATGAAGACCCATGGCCAAGTTCGTATGACGAGACTCGCACAATTGCTCAGAGA
TTACTTCGGTCATGAGAGTGAAACAAATGAAGAACAAGCAGATGAACAAATAAATGATCAAACAACCTCAGCACCTGCAC
AACAACTCGTAGAATTAACAGAAGCAACGATTTATGAAATTGACCCGATGATTGGTATGGGTAAGGTCACACCTTATACT
TTTAATCATGAATAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-719)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

• AAA domain (AAA_30) (339-544)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	49.812	99.378	0.495