Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FORC71_RS00765 Genome accession   NZ_CP023485
Coordinates   149048..149773 (-) Length   241 a.a.
NCBI ID   WP_065779601.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_071     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 144048..154773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC71_RS00740 (FORC71_0123) - 145167..145658 (+) 492 WP_025505527.1 type II secretion system protein M -
  FORC71_RS00745 (FORC71_0124) - 145660..146421 (+) 762 WP_029855938.1 type II secretion system protein N -
  FORC71_RS00750 (FORC71_0125) cysQ 146707..147534 (-) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FORC71_RS00755 (FORC71_0126) nudE 147576..148145 (-) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  FORC71_RS00760 (FORC71_0127) nfuA 148366..148950 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  FORC71_RS00765 (FORC71_0128) comF 149048..149773 (-) 726 WP_065779601.1 phosphoribosyltransferase family protein Machinery gene
  FORC71_RS00770 (FORC71_0129) bioH 149858..150625 (+) 768 WP_029843267.1 pimeloyl-ACP methyl ester esterase BioH -
  FORC71_RS00775 (FORC71_0130) - 150749..151213 (+) 465 WP_005459035.1 hypothetical protein -
  FORC71_RS00780 (FORC71_0131) - 151349..153670 (-) 2322 WP_065779600.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27636.81 Da        Isoelectric Point: 9.1620

>NTDB_id=247604 FORC71_RS00765 WP_065779601.1 149048..149773(-) (comF) [Vibrio parahaemolyticus strain FORC_071]
MLSHHWQNIMHRVLSSQCGLCRFPIQAAAQPNALRWCGHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHAQSQRGYKKSSREQNLKGAFTLNQLPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=247604 FORC71_RS00765 WP_065779601.1 149048..149773(-) (comF) [Vibrio parahaemolyticus strain FORC_071]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGGTCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCTGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTATTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGCCCAGTCACAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCTACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.784

100

0.718
  comF Vibrio cholerae strain A1552

47.899

98.755

0.473

Multiple sequence alignment