Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   COP00_RS08255 Genome accession   NZ_CP023481
Coordinates   1532959..1535307 (-) Length   782 a.a.
NCBI ID   WP_057957465.1    Uniprot ID   A0A0T6BUR6
Organism   Bacillus glycinifermentans strain KBN06P03352     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1527959..1540307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COP00_RS08240 (COP00_08240) dtd 1529604..1530047 (-) 444 WP_048353550.1 D-aminoacyl-tRNA deacylase -
  COP00_RS08245 (COP00_08245) - 1530060..1532261 (-) 2202 WP_048353549.1 RelA/SpoT family protein -
  COP00_RS08250 (COP00_08250) - 1532429..1532941 (-) 513 WP_046132106.1 adenine phosphoribosyltransferase -
  COP00_RS08255 (COP00_08255) recJ 1532959..1535307 (-) 2349 WP_057957465.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  COP00_RS08260 (COP00_08260) - 1535377..1535670 (-) 294 WP_048353599.1 lipopolysaccharide assembly LapA domain-containing protein -
  COP00_RS08265 (COP00_08265) - 1535757..1536251 (-) 495 WP_048353548.1 cation:proton antiporter regulatory subunit -
  COP00_RS08270 (COP00_08270) secDF 1536394..1538619 (-) 2226 WP_048353547.1 protein translocase subunit SecDF -
  COP00_RS08275 (COP00_08275) - 1538659..1538955 (-) 297 WP_048353546.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 782 a.a.        Molecular weight: 87940.50 Da        Isoelectric Point: 4.8682

>NTDB_id=247501 COP00_RS08255 WP_057957465.1 1532959..1535307(-) (recJ) [Bacillus glycinifermentans strain KBN06P03352]
MLASKMRWDVQTPDKEKVESLSGELGITPLAASLLVMRGYDTADKAASFLYGKDAVFHDPYLLKDMEKAVRRIKQAISEH
EQIMIYGDYDADGVTSTTVLLQALKTFGANVDFYIPDRFKEGYGPNEAAFRQIKEQGCSLIITVDTGIAGVHEADVAKEL
GIDLIITDHHEPGPVLPDAYAIVHPKQPGCSYPFKELAGVGVAFKLAHALLGEVPEELLDLCAIGTIADLVPLHDENRHI
AKLGISQFKKTKRPGLKALTKIAGAEIQQANEETIGFQIAPRINAVGRIEQADPAVHLLNTEDETEAEELAAEIDSLNKE
RQKIVNQITDEAVHMIEEQGLDQSVIVAARPGWNPGVVGIVASKLVERFYRPAIVLGIDEEKGIAKGSARSIKGFDLFQN
LSECRDILPHFGGHPMAAGMTLDQEDVEVLRERINRQAEAVLTEEDFIPVQEVDLCCRLEDITVDSIAEMNMLAPFGTGN
PKPFVLVEEAEIEEARKIGANQNHLKLLLADGQAKLDCVGFYKGEIEENVVPGAKISLVGELSINEWNNRKKPQLMIKDA
AIKEWQLFDLRGKRSWEEKILKLDPEKRTFICFREETKTKLAETGLRDELIVIRGEEEAMELDLHNRYAVFIDTPQSIDI
FDHAVKEKRLERMYLIFNQSDDHFFSTFPTRDYFKWYYAFLLKRGSFDLAKYGGELARHKGWTKDTIDFMTKVFFELGFV
TIENGVLSVVYGAAKRDLTDSETYRKKQRLIELEQKLVYSSADELKQWLNKRMNENSEALKV

Nucleotide


Download         Length: 2349 bp        

>NTDB_id=247501 COP00_RS08255 WP_057957465.1 1532959..1535307(-) (recJ) [Bacillus glycinifermentans strain KBN06P03352]
ATGTTAGCGTCAAAAATGCGTTGGGACGTGCAAACGCCCGACAAAGAAAAGGTGGAGTCGCTCTCCGGAGAATTGGGCAT
CACTCCCCTTGCCGCCTCATTGCTTGTCATGAGAGGCTATGATACAGCCGATAAAGCAGCTTCGTTTTTATATGGCAAGG
ATGCTGTCTTTCATGATCCCTATCTGCTAAAAGATATGGAAAAAGCTGTACGGCGAATCAAGCAGGCAATTTCGGAACAC
GAACAGATCATGATTTATGGAGATTACGATGCGGACGGTGTGACAAGCACGACCGTCCTTTTGCAGGCTTTGAAAACATT
TGGAGCAAACGTCGATTTTTATATACCGGACCGTTTTAAAGAAGGCTACGGTCCCAATGAAGCCGCTTTCCGCCAGATCA
AAGAACAGGGCTGTTCTTTAATCATCACGGTGGACACAGGGATTGCCGGCGTTCATGAAGCGGATGTCGCCAAAGAACTC
GGCATCGATCTGATTATCACCGACCACCACGAACCGGGACCGGTTTTACCTGATGCATATGCGATCGTCCATCCGAAGCA
GCCCGGCTGCAGCTATCCGTTTAAAGAGCTTGCCGGCGTTGGGGTGGCATTCAAGCTTGCCCACGCGCTTCTCGGAGAGG
TTCCCGAAGAGCTGCTCGACCTGTGTGCCATCGGGACGATTGCCGACCTCGTGCCGCTTCATGATGAGAACAGGCACATC
GCCAAGCTTGGCATCTCACAGTTTAAGAAAACGAAGCGGCCCGGTTTAAAAGCGCTGACGAAGATCGCGGGAGCGGAGAT
TCAGCAGGCGAATGAAGAAACGATCGGTTTTCAAATCGCGCCCCGCATCAACGCCGTCGGCAGAATTGAGCAGGCTGATC
CGGCCGTTCACCTTTTGAACACAGAGGATGAAACAGAAGCGGAAGAGCTCGCCGCAGAAATTGACAGCTTGAATAAAGAG
CGGCAAAAAATCGTCAATCAGATCACCGATGAAGCGGTTCACATGATAGAGGAGCAAGGTCTTGACCAATCAGTTATCGT
CGCGGCGCGGCCCGGCTGGAATCCCGGTGTGGTCGGGATCGTCGCTTCAAAGCTTGTCGAACGGTTTTACCGGCCGGCCA
TCGTGCTCGGAATCGATGAAGAAAAAGGCATCGCCAAAGGATCTGCGCGCAGCATCAAAGGCTTTGATCTGTTTCAAAAC
CTCTCGGAATGCCGGGACATCCTTCCGCATTTCGGCGGCCATCCGATGGCGGCAGGGATGACGCTCGATCAAGAAGACGT
CGAGGTACTGAGGGAAAGGATCAATCGCCAGGCCGAAGCCGTCTTGACGGAGGAAGATTTCATTCCTGTGCAGGAAGTCG
ATCTTTGCTGCCGCTTGGAGGATATCACGGTTGACAGCATCGCTGAAATGAACATGCTCGCTCCATTCGGCACGGGAAAC
CCGAAGCCTTTCGTACTCGTTGAAGAGGCCGAAATCGAAGAAGCGAGAAAAATCGGCGCCAATCAAAATCACTTGAAGCT
CCTGCTCGCCGATGGACAGGCAAAGCTGGACTGCGTCGGTTTTTATAAAGGGGAAATCGAGGAAAACGTCGTTCCCGGAG
CGAAGATTTCTCTCGTCGGCGAACTGTCGATCAACGAATGGAACAACAGAAAAAAACCGCAATTAATGATAAAAGATGCA
GCCATAAAAGAATGGCAGCTTTTTGATTTAAGAGGAAAGCGGTCATGGGAAGAAAAAATTCTGAAATTGGACCCCGAAAA
GCGTACATTCATTTGTTTTCGGGAGGAAACAAAAACAAAACTGGCGGAAACCGGCCTGCGTGATGAGCTGATTGTGATCA
GAGGCGAAGAAGAGGCAATGGAGCTCGATCTACATAATCGCTATGCCGTTTTCATCGATACGCCGCAATCGATTGATATA
TTTGACCATGCTGTAAAAGAAAAACGGCTGGAGCGGATGTATTTAATTTTCAACCAATCTGATGATCACTTTTTTTCCAC
ATTTCCGACAAGGGATTATTTTAAATGGTATTATGCTTTTCTTCTGAAAAGAGGCTCTTTTGACCTGGCGAAATACGGCG
GAGAGCTGGCCAGGCATAAAGGCTGGACAAAAGATACAATCGATTTTATGACAAAGGTGTTTTTTGAGCTCGGTTTTGTT
ACAATAGAGAATGGTGTTTTATCTGTTGTATATGGTGCGGCAAAACGGGATTTAACAGATTCTGAAACGTACCGGAAAAA
ACAGCGCCTGATTGAATTGGAGCAAAAGCTCGTCTATTCTTCGGCGGATGAGCTTAAACAGTGGCTGAATAAGCGGATGA
ATGAGAATTCTGAAGCTTTGAAAGTATGA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(453-559)

DHHA1 domain (DHHA1)

(315-436)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6BUR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

69.833

99.616

0.696

Multiple sequence alignment