Detailed information NTG0247500

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: COP00_RS08175
• Genome accession: NZ_CP023481
• Coordinates: 1514775..1517147 (-)
• Length: 790 a.a.
• NCBI ID: WP_048406433.1
• Uniprot ID: A0A0J6HLG7
• Organism: Bacillus glycinifermentans strain KBN06P03352
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1509775..1522147

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
COP00_RS08140 (COP00_08140)	-	1510911..1511639 (+)	729	WP_048353563.1	amino acid ABC transporter ATP-binding protein	-
COP00_RS08145 (COP00_08145)	-	1511660..1512469 (+)	810	WP_048353562.1	ABC transporter substrate-binding protein	-
COP00_RS08150 (COP00_08150)	-	1512509..1513159 (+)	651	WP_048353561.1	amino acid ABC transporter permease	-
COP00_RS08155 (COP00_08155)	-	1513181..1513831 (+)	651	WP_048353560.1	amino acid ABC transporter permease	-
COP00_RS08160 (COP00_08160)	-	1513867..1513998 (-)	132	WP_082142468.1	YrzQ family protein	-
COP00_RS08165 (COP00_08165)	-	1514014..1514205 (-)	192	WP_046132119.1	hypothetical protein	-
COP00_RS08170 (COP00_08170)	-	1514225..1514686 (-)	462	WP_048353559.1	PRC-barrel domain-containing protein	-
COP00_RS08175 (COP00_08175)	recD2	1514775..1517147 (-)	2373	WP_048406433.1	ATP-dependent RecD-like DNA helicase	Machinery gene
COP00_RS08180 (COP00_08180)	-	1517205..1517855 (-)	651	WP_048353558.1	tetratricopeptide repeat protein	-
COP00_RS08185 (COP00_08185)	mnmA	1517943..1519061 (-)	1119	WP_048406389.1	tRNA 2-thiouridine(34) synthase MnmA	-
COP00_RS08190 (COP00_08190)	-	1519146..1520285 (-)	1140	WP_048353557.1	cysteine desulfurase family protein	-
COP00_RS08195 (COP00_08195)	cymR	1520305..1520721 (-)	417	WP_046132114.1	cysteine metabolism transcriptional regulator CymR	-

Sequence

Protein

• Length: 790 a.a.
• Molecular weight: 88912.28 Da
• Isoelectric Point: 4.9972

>NTDB_id=247500 COP00_RS08175 WP_048406433.1 1514775..1517147(-) (recD2) [Bacillus glycinifermentans strain KBN06P03352]
MQMDEASFLKGTVTTVIYHNETNLYTVLKVKVQETSESFDEKTVSVTGYFPAIFEDETYTFYGKKASHPKFGLQFQTDHF
KKEVPTTKEGVIQYLSSDLFEGIGKKTAEEIVNKLGEGAINRILGDASVLYDVPKLSKKKADKLAAALQQHQGLEQIMIS
LSEFGFGPQLSMKIYQAYESETLDKIRENPYQLVKDVEGIGFVKADELGGRMGISGRHPERVKAAILFTIEAACLQEGHT
YIETKQLIIETQKLLNQSSGEEKVTEMDVADSIISLGEQKELFIEDDRCYYPSLYYAEQSFAKRVLTIAEQTEYDDQFPE
SEFLLALGELEERMQVQYAPSQKEAIQKALMSPMLLLTGGPGTGKTTVIRGIVELYSELHGLSLNPADYKKDEAFPFVLA
APTGRAAKRMSESTGLPAVTIHRLLGWNGSEGFTHDEDNPIEGRLVIIDETSMLDIWLANQLFKAIPNRIQVIMVGDEDQ
LPSVGPGQVLRDLLASNVIASVRLTDIYRQAEGSSIVELAHDMKKGRLPQNLTAPTKDRSFIRCRQQQMKEVVEKVVQNA
LQKGYSARDIQVLAPMYRGPAGINELNALLQNILNPPKQKGRELKYGDVVYRTGDKVLQLVNQPEHNVFNGDMGEIVSIF
YAKENTEKEDMAVVSFDGNEITFTKKDFNQFTHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAITRSKKFLIL
CGEEEALQWGIKNKDSSERQTSLKRRLQQAAHEEDEELAALQKELPFSVYDANIGMEGITPFDFMEKEAE

Nucleotide

• Length: 2373 bp

>NTDB_id=247500 COP00_RS08175 WP_048406433.1 1514775..1517147(-) (recD2) [Bacillus glycinifermentans strain KBN06P03352]
ATGCAAATGGATGAAGCGTCCTTTCTAAAGGGAACGGTAACAACCGTCATCTATCACAACGAAACAAATCTTTATACCGT
ACTGAAAGTAAAAGTCCAGGAAACATCTGAATCGTTTGATGAGAAAACCGTTTCTGTCACTGGTTACTTTCCGGCGATCT
TTGAAGATGAAACGTATACGTTTTACGGAAAAAAAGCCTCCCATCCGAAATTCGGCCTCCAATTTCAGACGGATCATTTT
AAAAAAGAAGTCCCCACGACAAAAGAGGGCGTCATTCAATATTTGTCGAGCGATTTGTTTGAAGGCATCGGCAAAAAAAC
GGCCGAAGAAATCGTCAATAAGCTCGGGGAAGGCGCGATTAACAGAATTCTGGGAGACGCTTCAGTGCTTTACGACGTCC
CGAAGCTGTCAAAGAAAAAAGCGGATAAACTTGCCGCCGCGCTTCAGCAGCATCAGGGGCTCGAGCAGATCATGATTTCG
TTAAGCGAGTTCGGCTTTGGACCCCAGCTTTCGATGAAAATTTATCAGGCATATGAATCGGAAACGCTTGATAAAATCCG
CGAAAATCCGTACCAGCTCGTGAAGGACGTCGAAGGGATCGGCTTCGTGAAAGCGGATGAACTGGGCGGCAGAATGGGGA
TTTCGGGCAGGCATCCAGAACGGGTCAAAGCGGCGATTTTATTTACGATTGAAGCGGCATGCCTGCAGGAAGGGCATACT
TACATCGAAACAAAACAGCTCATCATCGAGACGCAAAAGCTGCTGAACCAGTCGTCAGGAGAAGAAAAGGTGACCGAAAT
GGACGTGGCAGATTCGATCATTTCGCTCGGCGAACAGAAGGAATTGTTCATAGAAGATGACAGGTGCTACTATCCTTCGC
TGTACTATGCTGAACAAAGCTTTGCCAAAAGGGTGCTGACGATCGCGGAACAAACCGAATATGACGATCAGTTCCCCGAA
TCGGAATTTTTGCTTGCTTTAGGGGAGCTTGAGGAACGGATGCAGGTTCAGTACGCGCCAAGCCAAAAAGAAGCGATTCA
AAAAGCGCTGATGTCTCCGATGCTCCTTTTAACCGGAGGACCGGGCACTGGGAAAACGACGGTCATCAGGGGAATTGTCG
AATTGTACAGCGAGCTTCACGGTTTGAGCTTGAATCCGGCTGATTATAAAAAAGACGAGGCGTTTCCGTTTGTCCTGGCT
GCACCGACAGGCAGAGCGGCCAAACGGATGAGCGAGTCTACGGGACTTCCGGCCGTGACGATCCACAGGCTCCTCGGCTG
GAACGGTTCCGAAGGGTTTACACATGACGAGGACAACCCGATCGAAGGCCGTCTGGTGATTATCGACGAGACGAGCATGC
TCGATATATGGCTTGCCAATCAATTGTTCAAAGCGATACCCAACCGGATACAGGTCATCATGGTCGGAGACGAAGATCAG
CTTCCGTCCGTCGGACCGGGACAGGTGCTCAGGGATCTTTTAGCCTCGAATGTCATTGCTTCTGTCAGATTAACCGATAT
TTACCGGCAGGCTGAAGGCTCGTCAATCGTGGAACTTGCGCATGATATGAAAAAGGGCCGGCTGCCGCAAAATTTGACAG
CACCGACAAAGGACCGTTCATTTATCAGGTGCCGTCAGCAGCAAATGAAAGAGGTCGTGGAAAAAGTCGTCCAAAACGCA
TTACAAAAAGGGTATTCCGCTCGGGACATCCAAGTACTCGCTCCGATGTACAGAGGACCGGCGGGAATCAATGAATTAAA
CGCGCTTTTGCAAAACATCCTCAATCCGCCGAAGCAAAAAGGCAGGGAATTAAAGTACGGGGATGTCGTCTACAGGACGG
GAGATAAAGTTCTCCAGCTCGTCAACCAGCCGGAGCACAATGTGTTTAACGGAGATATGGGCGAAATCGTCTCCATCTTT
TATGCAAAGGAAAATACGGAAAAAGAAGACATGGCCGTCGTCTCCTTCGACGGCAATGAAATCACATTCACAAAAAAGGA
TTTTAATCAGTTTACGCATGCTTACTGCTGTTCGATTCATAAATCGCAGGGCAGCGAATTTCCGATCGTCATCCTTCCTG
TCGTCAAAAGCTATTACCGGATGCTGAGAAGAAATTTGCTTTATACGGCAATTACAAGAAGCAAAAAATTTCTCATTTTG
TGCGGCGAAGAGGAAGCGCTCCAATGGGGCATCAAAAACAAAGATTCCTCTGAAAGGCAGACTTCGCTCAAGAGAAGGCT
TCAGCAGGCAGCGCACGAAGAAGACGAAGAGCTCGCCGCGCTCCAAAAAGAGCTGCCGTTTAGCGTATATGACGCCAATA
TCGGCATGGAGGGCATCACACCGTTTGACTTTATGGAAAAAGAGGCGGAATAA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (586-654)

• Helix-hairpin-helix containing domain (HHH_RecD2) (151-241)

• AAA domain (AAA_30) (338-546)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (673-721)

3D structure

• AlphaFold DB: A0A0J6HLG7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	82.129	99.873	0.82