Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   COP00_RS01335 Genome accession   NZ_CP023481
Coordinates   262930..263709 (+) Length   259 a.a.
NCBI ID   WP_006638180.1    Uniprot ID   A0A6I7F231
Organism   Bacillus glycinifermentans strain KBN06P03352     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 257930..268709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COP00_RS01315 (COP00_01315) trmFO 258631..259935 (+) 1305 WP_048354623.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  COP00_RS01320 (COP00_01320) xerC 260002..260916 (+) 915 WP_048407238.1 tyrosine recombinase XerC -
  COP00_RS01325 (COP00_01325) hslV 260930..261472 (+) 543 WP_048354622.1 ATP-dependent protease subunit HslV -
  COP00_RS01330 (COP00_01330) hslU 261489..262892 (+) 1404 WP_048354621.1 HslU--HslV peptidase ATPase subunit -
  COP00_RS01335 (COP00_01335) codY 262930..263709 (+) 780 WP_006638180.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  COP00_RS01340 (COP00_01340) flgB 264050..264439 (+) 390 WP_048354620.1 flagellar basal body rod protein FlgB -
  COP00_RS01345 (COP00_01345) flgC 264439..264891 (+) 453 WP_048354619.1 flagellar basal body rod protein FlgC -
  COP00_RS01350 (COP00_01350) fliE 264904..265221 (+) 318 WP_048354618.1 flagellar hook-basal body complex protein FliE -
  COP00_RS01355 (COP00_01355) fliF 265272..266873 (+) 1602 WP_057957555.1 flagellar basal-body MS-ring/collar protein FliF -
  COP00_RS01360 (COP00_01360) fliG 266887..267903 (+) 1017 WP_048354617.1 flagellar motor switch protein FliG -
  COP00_RS01365 (COP00_01365) fliH 267887..268654 (+) 768 WP_082142516.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29087.45 Da        Isoelectric Point: 4.8196

>NTDB_id=247485 COP00_RS01335 WP_006638180.1 262930..263709(+) (codY) [Bacillus glycinifermentans strain KBN06P03352]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=247485 COP00_RS01335 WP_006638180.1 262930..263709(+) (codY) [Bacillus glycinifermentans strain KBN06P03352]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTCAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAACTTCTCGGTTTCTCTATCA
ACCAGCAGATCGAAAACGACCGGATGAAAAAAATGCTTGAAGAACGCCAGTTCCCTGAAGATTACACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCAAACCTCGACATTAACAGCGAATATACGGCGTTCCCTGTCGAAAACCGCGATCTTTTCCA
AGCAGGGTTGACAACGATCGTACCGATCATCGGCGGAGGAGAAAGGCTCGGAACGTTGATTCTTTCCCGTCTTCAGGAAA
AATTTGAAGACGATGATCTGATCCTTGCCGAATATGGCGCAACGGTTGTCGGAATGGAGATTCTCAGAGAGAAAGCCGAA
GAAATCGAAGAGGAAGCCCGCAGCAAGGCTGTCGTTCAAATGGCGATCAGTTCATTATCTTACAGCGAGCTTGAAGCGAT
TGAACATATCTTCGAGGAGCTAGATGGGAACGAAGGACTGCTCGTTGCAAGTAAAATTGCAGACCGCGTCGGCATTACAC
GCTCGGTTATCGTAAATGCGCTGAGAAAACTCGAAAGCGCAGGCGTTATTGAGTCCCGCTCATTAGGGATGAAAGGCACA
TACATTAAAGTCCTGAACAACAAATTCCTGATGGAGCTTGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7F231

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.981

100

0.95
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment