Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   CO204_RS05940 Genome accession   NZ_CP023477
Coordinates   1144364..1146166 (-) Length   600 a.a.
NCBI ID   WP_019313203.1    Uniprot ID   -
Organism   Streptococcus mutans strain LAR01     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1142620..1173975 1144364..1146166 within 0


Gene organization within MGE regions


Location: 1142620..1173975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO204_RS05935 (CO204_05920) rcrQ 1142620..1144374 (-) 1755 WP_002275251.1 ABC transporter ATP-binding protein Regulator
  CO204_RS05940 (CO204_05925) rcrP 1144364..1146166 (-) 1803 WP_019313203.1 ABC transporter ATP-binding protein Regulator
  CO204_RS05945 (CO204_05930) rcrR 1146170..1146604 (-) 435 WP_002263292.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  CO204_RS05950 (CO204_05935) queC 1147167..1147820 (+) 654 WP_106006754.1 7-cyano-7-deazaguanine synthase QueC -
  CO204_RS05955 (CO204_05940) queD 1147820..1148266 (+) 447 WP_002265145.1 6-carboxytetrahydropterin synthase QueD -
  CO204_RS05960 (CO204_05945) queE 1148263..1148979 (+) 717 WP_173677994.1 7-carboxy-7-deazaguanine synthase QueE -
  CO204_RS05965 (CO204_05950) queF 1148992..1149480 (+) 489 WP_002263288.1 preQ(1) synthase -
  CO204_RS05970 (CO204_05955) - 1149589..1149972 (+) 384 WP_002265142.1 DUF3021 family protein -
  CO204_RS05975 (CO204_05960) gdhA 1150082..1151431 (-) 1350 WP_002263849.1 NADP-specific glutamate dehydrogenase -
  CO204_RS05980 (CO204_05965) - 1152195..1152701 (+) 507 WP_002266553.1 DUF308 domain-containing protein -
  CO204_RS05985 (CO204_05970) gtfD 1152928..1157316 (-) 4389 WP_019313202.1 glucosyltransferase-S -
  CO204_RS05990 (CO204_05975) - 1157536..1158456 (-) 921 WP_002280369.1 AEC family transporter -
  CO204_RS05995 (CO204_05980) - 1158572..1160344 (-) 1773 WP_019313201.1 ABC transporter ATP-binding protein -
  CO204_RS06000 (CO204_05985) - 1160355..1162091 (-) 1737 WP_019313200.1 ABC transporter ATP-binding protein -
  CO204_RS06005 (CO204_05990) - 1162547..1164415 (-) 1869 WP_106006756.1 ABC-F family ATP-binding cassette domain-containing protein -
  CO204_RS06010 (CO204_05995) - 1164418..1165623 (-) 1206 WP_002266717.1 CCA tRNA nucleotidyltransferase -
  CO204_RS06015 (CO204_06000) dapB 1165620..1166387 (-) 768 WP_002262893.1 4-hydroxy-tetrahydrodipicolinate reductase -
  CO204_RS06020 (CO204_06005) - 1166399..1167244 (-) 846 WP_002266545.1 DegV family protein -
  CO204_RS06025 (CO204_06010) - 1167250..1167624 (-) 375 WP_002262891.1 DUF1149 family protein -
  CO204_RS06030 (CO204_06015) - 1167733..1169274 (-) 1542 WP_106006757.1 hypothetical protein -
  CO204_RS06035 (CO204_06020) - 1169261..1169977 (-) 717 WP_002284204.1 ABC transporter ATP-binding protein -
  CO204_RS06040 (CO204_06025) - 1170052..1170657 (-) 606 WP_002271489.1 TetR/AcrR family transcriptional regulator -
  CO204_RS06045 (CO204_06030) - 1170820..1171323 (-) 504 WP_168745594.1 phosphatase PAP2 family protein -
  CO204_RS06050 (CO204_06035) - 1171566..1172645 (-) 1080 WP_002271491.1 serine hydrolase -
  CO204_RS06055 (CO204_06040) galE 1172911..1173912 (-) 1002 WP_002307653.1 UDP-glucose 4-epimerase GalE -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 66901.67 Da        Isoelectric Point: 9.6552

>NTDB_id=247427 CO204_RS05940 WP_019313203.1 1144364..1146166(-) (rcrP) [Streptococcus mutans strain LAR01]
MFKIFKRLNAKEWGMVLLSTAFICLAVWMDLKTPEYMSNITTLLQTKGTTASDIMDPGSKMLMFSFGSFFMAVLVGFLAS
RTAASFTTRLRSDIFNRVMDYSEAEIKKFSIPSLLTRTTNDLTQLQIMIVMGMQVVTRGPIMAVWALTKIWGKSDEWTGA
VGVAVLIVFIMLSVLMFVAFPRQRQVQSLTDALNSTTRESLTGVRVVRAYNAEDYQDTKFKRENKSLTKLNLLVYRLMSL
MNPVMTVVSSGLTLAIYWIGAYLLNDIKIPMTSATASKGAIADRISVFSDMVVFSSYAMQVVVGFMMMVAIFIILPRALV
SAKRINEVLALNSSVHFKEYSKADNARKGEVEFHDVSFRYSKNSRAVIEHVSFSAKAGETVAFIGSTGSGKSTLVNLIPR
FYDATEGWIKIDGIKVQDYSHDDLNNKVGYIPQKAVLFSGTIRSNIAFGQSDQAPLDDAKIWEALELAQAKNFVEEKEKG
LDTEVAQGGTNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRILRNDLAKKTKEMTKLIVAQRISTIMDADHIL
VLDQGKVVGQGTHKELLANNDIYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=247427 CO204_RS05940 WP_019313203.1 1144364..1146166(-) (rcrP) [Streptococcus mutans strain LAR01]
ATGTTTAAAATTTTTAAACGTCTAAATGCTAAAGAATGGGGCATGGTTCTCCTTAGTACTGCCTTTATCTGTTTGGCTGT
CTGGATGGATTTGAAGACGCCCGAATATATGTCCAACATTACAACCTTGCTGCAGACTAAGGGAACGACCGCCTCAGATA
TTATGGATCCGGGATCTAAGATGCTCATGTTTTCATTTGGGAGCTTTTTTATGGCCGTTCTAGTTGGTTTTTTAGCTTCA
AGAACAGCTGCCAGCTTTACGACCCGTCTTCGATCTGATATTTTCAATCGGGTTATGGATTATTCAGAGGCGGAAATCAA
GAAATTTTCCATTCCCAGCCTTCTAACGCGTACGACTAATGATTTGACACAGTTGCAAATCATGATCGTTATGGGAATGC
AAGTGGTGACACGCGGTCCAATCATGGCTGTTTGGGCCTTGACTAAAATCTGGGGTAAAAGCGATGAATGGACAGGAGCA
GTCGGTGTTGCCGTTTTAATTGTCTTTATTATGCTGTCTGTTTTGATGTTTGTCGCTTTTCCAAGACAGCGTCAGGTGCA
GAGCTTGACGGATGCTCTAAATTCTACAACCCGTGAATCTCTGACTGGTGTTCGTGTTGTTCGGGCTTACAATGCAGAAG
ATTATCAGGACACTAAATTTAAGCGGGAAAATAAAAGCCTGACGAAATTGAATTTATTGGTCTATCGTCTGATGTCGCTA
ATGAATCCTGTCATGACAGTTGTTTCCAGTGGTCTAACTTTAGCTATTTATTGGATTGGAGCTTACCTGCTCAATGATAT
TAAAATTCCTATGACGAGTGCGACAGCTTCTAAAGGAGCTATTGCTGATCGTATCAGTGTTTTTAGTGATATGGTTGTCT
TTTCATCTTATGCCATGCAGGTTGTTGTCGGTTTTATGATGATGGTCGCTATCTTTATCATTTTACCGCGTGCTTTAGTT
TCTGCCAAACGAATTAATGAAGTATTGGCGCTTAACTCATCTGTACACTTCAAAGAATATTCTAAAGCAGACAATGCTCG
AAAAGGAGAAGTCGAATTTCATGATGTATCGTTTCGTTACAGTAAAAATTCTCGTGCGGTTATTGAGCATGTGTCTTTCA
GTGCTAAAGCTGGTGAGACAGTTGCTTTTATTGGTTCCACTGGCTCAGGAAAATCAACTCTTGTTAATCTGATTCCTCGT
TTTTATGATGCTACAGAAGGTTGGATTAAGATAGATGGAATCAAAGTGCAAGATTACAGCCATGATGACCTCAACAATAA
AGTCGGCTATATTCCGCAAAAGGCAGTGCTTTTTAGTGGGACCATTCGTTCTAATATTGCATTTGGGCAAAGCGATCAAG
CGCCGCTTGATGATGCTAAAATTTGGGAGGCTCTTGAACTAGCCCAAGCCAAAAACTTTGTTGAAGAAAAAGAAAAGGGT
CTGGATACCGAGGTAGCTCAAGGCGGTACCAACTTCTCTGGCGGTCAAAAGCAGCGCTTAGCTATTGCCCGTGCACTTGC
ACGCAAACCAGAAATTCTTATTTTTGATGACTCCTTCTCAGCTCTTGATTATAAGACGGATCGCATTCTGCGAAATGATT
TGGCAAAGAAAACCAAAGAAATGACTAAGTTGATTGTAGCCCAACGTATTTCAACTATTATGGATGCTGATCATATTTTA
GTCTTAGATCAAGGAAAGGTTGTTGGTCAAGGAACACACAAGGAATTACTGGCTAATAACGATATTTATCAAGAAATTGC
TTATTCACAACTATCTAAGGAGGAGTTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-266)

ABC transporter (ABC_tran)

(369-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

99.333

100

0.993

Multiple sequence alignment