Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FORC72_RS16640 Genome accession   NZ_CP023472
Coordinates   3222570..3223295 (+) Length   241 a.a.
NCBI ID   WP_120459149.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_072     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3217570..3228295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC72_RS16625 (FORC72_2912) - 3218676..3220997 (+) 2322 WP_120459148.1 Tex family protein -
  FORC72_RS16630 (FORC72_2913) - 3221130..3221594 (-) 465 WP_005459035.1 hypothetical protein -
  FORC72_RS16635 (FORC72_2914) bioH 3221718..3222485 (-) 768 WP_029817775.1 pimeloyl-ACP methyl ester esterase BioH -
  FORC72_RS16640 (FORC72_2915) comF 3222570..3223295 (+) 726 WP_120459149.1 phosphoribosyltransferase family protein Machinery gene
  FORC72_RS16645 (FORC72_2916) nfuA 3223393..3223977 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  FORC72_RS16650 (FORC72_2917) nudE 3224198..3224767 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  FORC72_RS16655 (FORC72_2918) cysQ 3224808..3225635 (+) 828 WP_017449059.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FORC72_RS16660 (FORC72_2919) - 3225921..3226682 (-) 762 WP_025535418.1 type II secretion system protein N -
  FORC72_RS16665 (FORC72_2920) - 3226684..3227175 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27621.75 Da        Isoelectric Point: 9.0105

>NTDB_id=247356 FORC72_RS16640 WP_120459149.1 3222570..3223295(+) (comF) [Vibrio parahaemolyticus strain FORC_072]
MLSHHWQNIMHRVLSSQCGLCRFPILAAAQPNALRWCDNCYQYLTPVKRCQRCGLSLKAEETNIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHAQSQRGNKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=247356 FORC72_RS16640 WP_120459149.1 3222570..3223295(+) (comF) [Vibrio parahaemolyticus strain FORC_072]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCTGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATAACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCAGAGGAAACAAATATAGAGAGTATTTGCGGCGAATGCCTCTCTGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTACTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGCCCAGTCGCAGCGCGGGAACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATAGTAGATGATGTAGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.614

100

0.726
  comF Vibrio cholerae strain A1552

49.58

98.755

0.49

Multiple sequence alignment