Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CLI98_RS17900 Genome accession   NZ_CP023431
Coordinates   3518571..3519350 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain SCGB 574     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3513571..3524350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLI98_RS17880 (CLI98_03518) trmFO 3514258..3515565 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CLI98_RS17885 (CLI98_03519) xerC 3515635..3516552 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  CLI98_RS17890 (CLI98_03520) hslV 3516568..3517113 (+) 546 WP_022553348.1 ATP-dependent protease subunit HslV -
  CLI98_RS17895 (CLI98_03521) hslU 3517130..3518533 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  CLI98_RS17900 (CLI98_03522) codY 3518571..3519350 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CLI98_RS17905 (CLI98_03523) flgB 3519704..3520093 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  CLI98_RS17910 (CLI98_03524) flgC 3520093..3520545 (+) 453 WP_022553347.1 flagellar basal body rod protein FlgC -
  CLI98_RS17915 (CLI98_03525) fliE 3520556..3520876 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  CLI98_RS17920 (CLI98_03526) fliF 3520919..3522529 (+) 1611 WP_022553346.1 flagellar basal-body MS-ring/collar protein FliF -
  CLI98_RS17925 (CLI98_03527) fliG 3522542..3523558 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  CLI98_RS17930 (CLI98_03528) fliH 3523551..3524306 (+) 756 WP_022553345.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=247106 CLI98_RS17900 WP_003154263.1 3518571..3519350(+) (codY) [Bacillus velezensis strain SCGB 574]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=247106 CLI98_RS17900 WP_003154263.1 3518571..3519350(+) (codY) [Bacillus velezensis strain SCGB 574]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCAGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment