Detailed information NTG0246788

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: Bateq7PJ16_RS09055
• Genome accession: NZ_CP023409
• Coordinates: 1733444..1734223 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis strain 7PJ-16
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1728444..1739223

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Bateq7PJ16_RS09035 (Bateq7PJ16_1784)	trmFO	1729137..1730444 (+)	1308	WP_015715883.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
Bateq7PJ16_RS09040 (Bateq7PJ16_1785)	xerC	1730512..1731426 (+)	915	WP_003231988.1	tyrosine recombinase XerC	-
Bateq7PJ16_RS09045 (Bateq7PJ16_1786)	clpQ	1731439..1731984 (+)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
Bateq7PJ16_RS09050 (Bateq7PJ16_1787)	hslU	1732001..1733404 (+)	1404	WP_003245556.1	HslU--HslV peptidase ATPase subunit	-
Bateq7PJ16_RS09055 (Bateq7PJ16_1788)	codY	1733444..1734223 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
Bateq7PJ16_RS09060 (Bateq7PJ16_1789)	flgB	1734603..1734992 (+)	390	WP_014479778.1	flagellar basal body rod protein FlgB	-
Bateq7PJ16_RS09065 (Bateq7PJ16_1790)	flgC	1734992..1735444 (+)	453	WP_021479294.1	flagellar basal body rod protein FlgC	-
Bateq7PJ16_RS09070 (Bateq7PJ16_1791)	fliE	1735455..1735775 (+)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
Bateq7PJ16_RS09075 (Bateq7PJ16_1792)	fliF	1735821..1737431 (+)	1611	WP_043940114.1	flagellar basal-body MS-ring/collar protein FliF	-
Bateq7PJ16_RS09080 (Bateq7PJ16_1793)	fliG	1737444..1738460 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
Bateq7PJ16_RS09085 (Bateq7PJ16_1794)	fliH	1738453..1739205 (+)	753	WP_185157875.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=246788 Bateq7PJ16_RS09055 WP_003220850.1 1733444..1734223(+) (codY) [Bacillus subtilis strain 7PJ-16]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=246788 Bateq7PJ16_RS09055 WP_003220850.1 1733444..1734223(+) (codY) [Bacillus subtilis strain 7PJ-16]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467